FC920561

Overview
NameFC920561
Unique NameFC920561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:24..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  270 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEMIGAGLTVN 734
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILAN 201          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 3
Query:  546 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGAGLTVND 737
            FR ++A N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL VND
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVND 67          
BLAST of FC920561 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 3
Query:  135 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEMIGA 719
            M  R+   ++  +GVF   T+   +V     +      E  L   +  VK+SI G  +IG L V N NG+++     D+E++         + V  I    +A+GN +A ND  A+    L  E  ++I D L V V   ++ G+ ++GS  + +N+G L+  + +  ++D    +  V    GTV RG  ++GA
Sbjct:    1 MLRRINIVDNPNIGVFILATDDLAVVPYNLLDEKVKLIEETLE--VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGA 190          
The following BLAST results are available for this feature:
BLAST of FC920561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METM51.238e-1535.22Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_TRYCR2.112e-1557.81Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_METS31.159e-1327.69Translation initiation factor 6 OS=Methanobrevibac... [more]

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Properties
Property NameValue
Genbank descriptionC32010A02EF RVDevelop1 Citrus clementina cDNA clone C32010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920561 ID=FC920561; Name=FC920561; organism=Citrus clementina; type=EST; length=739bp
GGATTTTATTGATATGGATATTCTGTACATGTTCGGTGGCTAACAGAAAA
ATCGAATTTGTATGTTATTCTTGCAGGTCTTGTGCTTTGATTCGGTCCAT
CTTTTAATCGGTTCAATTCTGTTAATTTGTAATCATGGCAACCAGACTTA
TGTTTGAGAATTCGTGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TTTTGCTTGGTCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTGA
GGCGGAGTTAGCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCA
ACAGGATTATCGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTG
CCACACACAACCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACC
TGATCAAGTTGTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAA
ATTGCATAGCATGCAATGACCATGTTGCTCTTGCACACACAGATCTTGAC
AGGGAAACGGAGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAGTTGCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCA
ACAGGGGTGGCTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAA
CTCTCTACACTCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGG
AAGTGAAATGATAGGTGCTGGGTTAACTGTGAATGACTG
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