FC920562

Overview
NameFC920562
Unique NameFC920562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12667 contig Ccv1_Contig12667:280..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_NEUCR (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-51 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 7.346e-98
Identity = 169/243 (69.55%), Postives = 195/243 (80.25%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS---DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            DRIF NL+G + P LK A K GDWH+TK+++LKG DWI+ EVK SGLRGRGGAGFPSGLKWSFM       D +P YLVVNADE EPGTCKDREIMR DPHKL+EGCL+AG  M A+AAYIYIRGE++ E   L+ A  EAYA GL+GKNACGSGYDFDV++H GAGAY+CGEET+L+ESLEGK GKPRLKPPFPA  GL+GCP+TV NVETVAV+PTI RRG +WFA FGR+        C+
Sbjct:   48 DRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFPSGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNATAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETSLIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQGTKLFCI 290          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_ASPNG (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Aspergillus niger GN=NUO51 PE=3 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 9.594e-98
Identity = 169/243 (69.55%), Postives = 196/243 (80.66%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS---DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            DRIFTNL+G H   LK AMK GDWHRTKD+VLKG DW+++E+K SGLRGRGGAGFPSGLK+SFM       D RP YLVVNADE EPGTCKDREIMR DP KL+EGCL+ G  M A+AAY+YIRGE+  E   L+RA  EAY AGL+GKNACG+GYDFDV+IH G GAY+CGEET+L+ES+EGK GKPRLKPPFPA  GL+GCP+TVTNVETVAV+PTI+RRG  WF+SFGR+        C+
Sbjct:   50 DRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFPSGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNANAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNAGTKLFCI 292          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NQO1_PARDE (NADH-quinone oxidoreductase chain 1 OS=Paracoccus denitrificans GN=nqo1 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.137e-97
Identity = 166/229 (72.49%), Postives = 193/229 (84.28%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            DRIFTNL+G+ D  L GA KRG W  T  ++ +G D I++E+K SGLRGRGGAGFP+G+KWSFMPK SDGRPSYLV+NADESEP TCKDREIMRHDPH L+EG LIA   M A AAYIYIRGE++ ER+ L+ A  E Y AGLLG+NA GSG+DFD+++H+GAGAYICGEETALLESLEGK+G PR+KPPFPA AGLYGCPTTV NVE++AV PTILRRG +WFASFGR
Sbjct:    6 DRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFPTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGR 234          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICBR (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain RML369-C) GN=nuoF PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.872e-93
Identity = 160/240 (66.67%), Postives = 190/240 (79.17%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            DRIFTNLHG     LK + K GDW  TK L+ KG +WI+ EVKKSGLRGRGGAGF +G KWSFMPK S  +PSYLVVNADESEPGTCKDR+I+R++PHKL+EGCL+A   + A++ YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG++ D+++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFAS G+         C+
Sbjct:    6 DRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGFSTGTKWSFMPKESK-KPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANSCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICB8 (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain OSU 85-389) GN=nuoF PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.872e-93
Identity = 160/240 (66.67%), Postives = 190/240 (79.17%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            DRIFTNLHG     LK + K GDW  TK L+ KG +WI+ EVKKSGLRGRGGAGF +G KWSFMPK S  +PSYLVVNADESEPGTCKDR+I+R++PHKL+EGCL+A   + A++ YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG++ D+++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFAS G+         C+
Sbjct:    6 DRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGFSTGTKWSFMPKESK-KPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANSCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICPR (NADH-quinone oxidoreductase subunit F OS=Rickettsia prowazekii GN=nuoF PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.293e-93
Identity = 158/240 (65.83%), Postives = 192/240 (80.00%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNL+G     LK + KRGDW+ TK L+ KG D+I++EVKKSGLRGRGGAGF +G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCLIA   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFA+ G+         C+
Sbjct:    6 DKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGFSTGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANTCYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTKVFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICFE (NADH-quinone oxidoreductase subunit F OS=Rickettsia felis GN=nuoF PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.867e-92
Identity = 158/240 (65.83%), Postives = 189/240 (78.75%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNLHG     LK + KRGDW  TK L+ KG ++I+ EVKKSGLRGRGGAGF +G+KWSFMPK S  +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFAS G+         C+
Sbjct:    6 DKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFSTGMKWSFMPKNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANDCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICTY (NADH-quinone oxidoreductase subunit F OS=Rickettsia typhi GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.342e-91
Identity = 157/240 (65.42%), Postives = 191/240 (79.58%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IF NL+G     LK + KRGDW+ TK L+ KG D+I++EVKKSGLRGRGGAGF +G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCLIA   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFA+ G+         C+
Sbjct:    6 DKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGFSTGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANNCYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICM5 (NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae (strain Mtu5) GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.342e-91
Identity = 158/240 (65.83%), Postives = 188/240 (78.33%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNLHG     LK + KRGDW  TK L+ KG D+IV EVKKSGLRGRGGAGF +G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKNAC SG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFA  G+         C+
Sbjct:    6 DKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFSTGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICCK (NADH-quinone oxidoreductase subunit F OS=Rickettsia canadensis (strain McKiel) GN=nuoF PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.342e-91
Identity = 157/240 (65.42%), Postives = 191/240 (79.58%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IF NLHG     LK + KRGDW  TK L+ KG D+I+ EVK+SGLRGRGGAGF +G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKNACGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA+ GLYGCPTT+ NVE++AV PTILRRG +WFAS G+         C+
Sbjct:    6 DKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGFSTGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALLESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGTKVFCI 244          
The following BLAST results are available for this feature:
BLAST of FC920562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NDUV1_NEUCR7.346e-9869.55NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]
NDUV1_ASPNG9.594e-9869.55NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]
NQO1_PARDE2.137e-9772.49NADH-quinone oxidoreductase chain 1 OS=Paracoccus ... [more]
NUOF_RICBR1.872e-9366.67NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICB81.872e-9366.67NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICPR9.293e-9365.83NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICFE7.867e-9265.83NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICTY1.342e-9165.42NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICM51.342e-9165.83NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICCK1.342e-9165.42NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC32010A04EF RVDevelop1 Citrus clementina cDNA clone C32010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920562 ID=FC920562; Name=FC920562; organism=Citrus clementina; type=EST; length=725bp
AAGACAGGATTTTCACCAACTTACATGGACTGCATGACCCTTTTCTCAAA
GGTGCCATGAAACGGGGTGATTGGCACAGAACTAAAGACTTGGTACTCAA
GGGTGCAGATTGGATTGTCAATGAAGTCAAGAAGTCTGGTCTCCGCGGAC
GTGGTGGTGCTGGTTTTCCCTCTGGCCTCAAGTGGTCCTTCATGCCCAAG
GTGTCTGATGGCCGTCCTTCGTATCTTGTTGTCAATGCTGATGAAAGTGA
ACCTGGAACCTGTAAAGACAGGGAAATTATGCGGCATGATCCACATAAGT
TGTTGGAGGGCTGCTTGATTGCTGGCGTAGGAATGAGGGCTTCTGCTGCT
TACATTTACATAAGGGGTGAATATGTAAATGAACGTAAAAACCTTGAAAG
AGCGAGGCAAGAAGCTTATGCTGCTGGATTGTTGGGCAAGAATGCCTGCG
GATCTGGTTATGATTTTGATGTGCATATCCACTATGGTGCTGGTGCTTAT
ATTTGTGGTGAAGAGACAGCTCTTTTGGAAAGCCTTGAAGGTAAACAGGG
GAAACCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGTTTATATGGTT
GTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTCCCACCATT
TTAAGGCGTGGACCGGACTGGTTTGCCAGTTTTGGCAGGAAGACAATTCT
GGTACAAAATTGTTTGTGTGTCGGG
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