FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 87/166 (52.41%), Postives = 107/166 (64.46%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD+ +   P  RI + LF    PKT ENF+Q   G   K G    YKG  FHRVIK FMIQ GDF   DG+G  SIYG +F DENF  +H G G LSMAN+GP++NG QFFIT  K  WLD KHVVFG+V+ +G+ +VR+IE+  T   +RP  +  IA CG +
Sbjct:   34 VFFDIEVDGKPLARIIIGLFGKTVPKTVENFKQLSIGTQLKDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVV-EGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+ IG    GR+   LF    PKT +NF    TGE  KG    GYK  +FHRVIKDFMIQ GDF +GDG+G  SIYG +F DENF  KH GPG +SMAN+G ++NG QFFIT  K  WLD KHVVFG+VL +G+ VVRK+E+  T   ++P     IA+CG++
Sbjct:   46 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE--KG---FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL-EGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 95/175 (54.29%), Postives = 113/175 (64.57%), Query Frame = 2
Query:  113 PPNPK-NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P  PK    VFFD+  G  P GRI + L+    PKTAENFR   TGE  KG    GY+G  FHRVIK FMIQ GDF +GDG+G  SIYG KF DENF  +HT  GLLSMAN+G ++NG QFFIT     WLD +HVVFG VL +G  VV +IENV  GP ++P     I + G++
Sbjct:   29 PRGPKITSKVFFDIEHGDKPLGRIVLGLYGKTVPKTAENFRALATGE--KG---FGYEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVL-EGYEVVEQIENVPKGPGDKPAETVKIVKSGQI 197          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 96/169 (56.80%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP+VFFDV     P GRI MELF++I P+TAENFR  CTGE  KG    G+K   FHRVI DF+ Q GD  K DG+G  SIYG KF+DENF  KHTGPGLLSMAN G N+N  QF IT  K + LD KHVVFG V  DG+  V+KIE+  + P        TI ECG++
Sbjct: 3063 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGE--KG---FGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFV-KDGMDTVKKIESFGS-PKGSVCRRITITECGQI 3224          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 95/169 (56.21%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP+VFFD+     P GRI MELF++I PKTAENFR  CTGE  KG    G+K   FHRVI DF+ Q GD  K DG+G  SIYG KF+DENF  KHTGPGLLSMAN G ++N  QFFIT  K + LD KHVVFG V  DG+  V+KIE+  + P         I ECG++
Sbjct:  924 NPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGE--KG---FGFKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFV-KDGMDTVKKIESFGS-PKGSVSRRIIITECGQI 1085          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 90/148 (60.81%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN 571
            NP+V+ DV     P GR+ +EL AD+ PKTAENFR  CTGE  KG    GYKG  FHRVI  FM QAGDF   +G+G  SIYG +F DENF  KH GPG+LSMAN+GPN+NG QFFI   K DWLD KHVVFG V  +G+ VV+KIE+
Sbjct:   46 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV-KEGMDVVKKIES 187          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 88/168 (52.38%), Postives = 113/168 (67.26%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD+ I   PAGRI   L+    PKT ENFR  CTGE   G  G P+ YK  +FHR+I +FMIQ GDF +GDG+G  SIYG KF+DENF  KH+ PGLLSMAN+GPN+NG QFFIT     WLD +H VFG V+ +G+ +V+ +E++ +      K+A  I+  GE+
Sbjct:   32 VFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVI-EGMDIVKLLESIGSQSGTPSKIA-KISNSGEL 197          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 92/147 (62.59%), Postives = 106/147 (72.11%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN 571
            P VFFD+T    P GRI MEL +D+ PKTAENFR  CTGE  KG    GYKG  FHRVI +FM Q GDF   +G+G  SIYG+KF DENF  KHTG G+LSMAN+G N+NG QFFI   K  WLDNKHVVFG V+ +GL VV+KIE+
Sbjct:   67 PRVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGE--KG---FGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVV-EGLDVVKKIES 207          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 97/172 (56.40%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            + P VFFD+ IG    GRI +EL   + PKTAENFR  CTGE   G  G P+ +KG  FHRVIK FMIQ GDF   +G+G  SIYG KF DENF  KH  P LLSMANSGP +NG QFFIT      LD KHVVFG V+ +G  VVRK+EN+ T   ++P    TI ECGE+
Sbjct:    6 RRPRVFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVI-NGKSVVRKVENMNT-QADKPVKDVTIVECGEL 173          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 95/169 (56.21%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATG-PNNRPKLACTIAECGEM 634
            V+FDV I    AGR+ + LF    PKTAENFR  CTGE    K G P+ YKG +FHR+I  FMIQ GDF  G+G G  SIYG KF DENF  KHTGPG+LSMANSG ++NG QFFIT     WLD +HVVFG+V+  G+ VV KIE  A G  +  PK    IA+ GE+
Sbjct:   34 VYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVV-QGMDVVYKIE--AEGKQSGTPKSKVVIADSGEL 199          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIB_SCHMA4.865e-4352.41Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_HUMAN4.865e-4354.22Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIB_ASPFU4.865e-4354.29Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
RBP2_HUMAN6.354e-4356.80E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_BOVIN6.354e-4356.21E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIF_BOVIN6.354e-4360.81Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_DICDI6.354e-4352.38Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIA_DROME6.354e-4362.59Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPID_ASPOR8.299e-4356.40Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CP19D_ARATH8.299e-4356.21Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
back to top