FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 89/173 (51.45%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            + P  FFD+ I   PAGR+  ELF+D+ PKT ENFR  CTGE   G     P+ YK C FHRV+KDFM+Q GDF +G+G G  SIYG  F+DE+F  KH    LLSMAN G ++NG QFFIT      LD  HVVFG+V+  G  VVR+IEN  T   ++P     I  CGE+
Sbjct:    6 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 89/173 (51.45%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            + P  FFD+ I   PAGR+  ELF+D+ PKT ENFR  CTGE   G     P+ YK C FHRV+KDFM+Q GDF +G+G G  SIYG  F+DE+F  KH    LLSMAN G ++NG QFFIT      LD  HVVFG+V+  G  VVR+IEN  T   ++P     I  CGE+
Sbjct:    6 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 89/173 (51.45%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL---PVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            + P  FFD+ I   PAGR+  ELF+D+ PKT ENFR  CTGE   G     P+ YK C FHRV+KDFM+Q GDF +G+G G  SIYG  F+DE+F  KH    LLSMAN G ++NG QFFIT      LD  HVVFG+V+  G  VVR+IEN  T   ++P     I  CGE+
Sbjct:    6 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVI-SGQEVVREIENQKTDAASKPFAEVRILSCGEL 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 88/171 (51.46%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEY---RKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P VFFD++    P GR+  EL+ D+ PKTAENFR  CTGE       G  + YKG  FHR+IKDFM Q GDF  G G G  SIYG KF+DENF   H  P LLSMAN+G N+NG QFFIT      L+ KHVVFG V+  G  +VR++E    G N++P     I++CGE+
Sbjct:    8 PKVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVI-QGKSIVRQLERCDKGENDKPVEDWIISDCGEL 177          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+ IG    GR+   LF    PKT +NF    TGE  KG    GYK  +FHRVIKDFMIQ GDF +GDG+G  SIYG +F DENF  KH GPG +SMAN+G ++NG QFFIT  K  WLD KHVVFG+VL +G+ VVRK+E+  T   ++P     I + G++
Sbjct:   46 VYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGE--KG---FGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVL-EGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 90/168 (53.57%), Postives = 113/168 (67.26%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            N +VFFD+T+   P GRI ++LFAD   KTAENFR   TGE  KG     YKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDEN I KHTG G+LSMAN+GPN+NG QFFI  AK +WLD KHV FG+V  + + +V  +E+     N++     TIA+CG+
Sbjct:    3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGE--KG---FRYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKV-KERVNIVEAMEHFGY-RNSKTSKKITIADCGQ 163          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 89/163 (54.60%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  140 FFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 628
            FFDV     P GRI  +LF D+ PKTA NFR  CTGE  KG    GY G  FHRVI  FM+Q GDF +G+G+G  SIYG KF DENF  KH  PGLLSMAN+GPN+NG QFFIT     WLD KHVVFG V  +G+ VV+K+E++ +  +   +    I +CG
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGE--KG---YGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVT-EGMDVVKKVESLGSN-SGATRARIVIDKCG 160          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 92/176 (52.27%), Postives = 109/176 (61.93%), Query Frame = 2
Query:  113 PPNPK-NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRK-GGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            PP  + N   FFD++I   PAGRI   L+    P+T ENFR FCTGE  K  G    Y+G  FHRVIK FMIQ GD   G+G+G  SIYG  FDDEN   KH  P LLSMAN GP++NG QFFIT  +   LD KH VFG V+  G+ VV+ IEN+ TG  ++P     I  CGEM
Sbjct:    2 PPEVRGNKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELGKMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVI-KGVEVVKAIENLETGNEDKPVCKVEITHCGEM 176          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 89/168 (52.98%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            N ++FFD+T+   P GRI ++ FAD  PKTAENFR   TGE  KG     YKG  FHR+I  FM Q GDF   +G+G  SIYG KFDDEN I KHTG G+LSMAN+GPN+NG QFFI  AK +WLD KHV FG+V  + + +V  +E+     N++     TIA+CG+
Sbjct:    3 NSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGE--KG---FRYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKV-KERVNIVEAMEHFGY-RNSKTSKKITIADCGQ 163          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 90/166 (54.22%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD  +     GRI+ EL+ ++ PKTAENFR  CTGE  KG    GYKG  FHR+I DFMIQ GD    +G G  SIYG KF DENF+ KH   GLLSMAN+GPN+NG QFFIT   C WLD KHVVFG V   G+ +V+ IE+  T  + +P+    I E GE+
Sbjct:   24 VFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGE--KGW---GYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVT-KGMDIVKAIESYGTA-SGKPRAEIVIEEAGEL 182          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIG_RAT1.198e-4151.45Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE1.198e-4151.45Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN1.198e-4151.45Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPID_DEBHA1.198e-4151.46Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPIB_MOUSE1.198e-4153.01Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PAL4B_HUMAN1.565e-4153.57Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPH_SCHPO1.565e-4154.60Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYP8_CAEEL1.565e-4152.27Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PAL4A_HUMAN2.044e-4152.98Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
CYPC_YEAST2.044e-4154.22Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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