FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 87/170 (51.18%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P VFFD+ +    +GR+  +LF+D  PKTAENFR  CTGE  KG  G P+ YK   FHR+I  FM Q GDF  GDG G  SIYG  F DENF  KH G GLLSMAN+GPN+NG QFFIT     WLD  H VFG+++ DG  V+  +E   +  +  P     I +CGE+
Sbjct:    7 PKVFFDIAVNGQHSGRMTFKLFSDTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIV-DGSKVLDLLEQHGS-RSGMPSAKIEITDCGEL 174          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.487e-41
Identity = 92/171 (53.80%), Postives = 107/171 (62.57%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEY----RKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN-VATGPNNRPKLACTIAECG 628
            P  FFD++IG  P GRI  EL+ DI PKTAENF + C G       K  +P+ YKG  FHRVIKDFM Q GDF   +G+G  SIY  KF+DENF  KH  P LLSMAN+GPN+NG Q FITC     LD KHVVFG V+  G  +VR IEN      NN+P     I +CG
Sbjct:    4 PKTFFDISIGGKPQGRIVFELYNDIVPKTAENFLKLCEGNAGMAKTKPDVPLSYKGSIFHRVIKDFMCQFGDFTNFNGTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVI-QGKRIVRLIENQQCDQENNKPLRDVKIDDCG 173          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.487e-41
Identity = 89/172 (51.74%), Postives = 109/172 (63.37%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYR---KGGLPVGYKGCQFHRVIKDFMIQAGDFLKGD---GSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD++    P GR+  +L+ D+ PKTA NFR  CTG+     K G P+ YK   FHRVIKDFM Q GDF       G+G  SIYG KF+DENF   H  P LLSMANSGPN+NG QFFIT      LD KHVVFG V+ +G  +VR++E    G N+RP     IA+CGE+
Sbjct:    6 VYFDISCNGKPKGRVVFKLYDDVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFTAPSDHLGTGGESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVI-EGKSIVRQLERSEKGANDRPVEDWKIADCGEL 176          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 90/171 (52.63%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEY----RKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVAT-GPNNRPKLACTIAECG 628
            P  +FD++IG  P GRI  EL+ D+ PKTAENF + C G+      K  +P+ YKG  FHRVIKDFMIQ GDF   DG+G  SIYG KF+DENF  KH  P LLSMAN+GPN+NG Q FITC     LD KHVVFG V+ +G  +VR IE   T    ++P     +  CG
Sbjct:    4 PKAYFDISIGGTPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVI-EGKRLVRLIEKQQTEDGTDKPMHDVKVEGCG 173          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.014e-40
Identity = 88/169 (52.07%), Postives = 112/169 (66.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENF---RQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD+ IG  P G+I + LF ++ PKT +NF    Q   GE        GY G +FHRVI++FMIQ GDF +GDG+G  SIYG +F+DENF  +H GPG LSMAN+G ++NG QFFIT AK  WLD KHVVFG++L +G+ VVR+IE    G  +RP     IA  G +
Sbjct:   28 VFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGE--------GYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKIL-EGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.325e-40
Identity = 89/168 (52.98%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FDV I    AGRI M LF    PKT ENFR  CTGE    K G  + YKG  FHR+I  FM+Q GDF  G+G G  SIYG KF DENF  KHTGPG LSMAN+G ++NG QFFIT     WLD +HVVFG+V+  G+ VV K+E      +  PK    I + GE+
Sbjct:   37 VYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVV-TGMDVVYKVE-AEGNQSGTPKSKVVIVDSGEL 202          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 90/166 (54.22%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+ IG  P GRI + LF    PKTA NF      E  K     GY G +FHRVI DFMIQ GDF +GDG+G  SIYG KF DENF  KH G G LSMAN+G ++NG QFFIT  K  WLD +HVVFG++L +G+ VVRKIE     P +RPK    IA  G +
Sbjct:   31 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFI-----ELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKIL-EGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 190          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.913e-39
Identity = 91/172 (52.91%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG---GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +     GRI +ELFAD  PKTAENFR  CTGE   G    +P+ YKG  FHR+IK FM Q GDF    G G  SIYG  F DE+F  KH   GLLSMAN GPN+   QFFIT      LD KHVVFGRV+  G  VV  +EN      +RP     IA CGE+
Sbjct:    3 NPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVV-SGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 89/165 (53.94%), Postives = 109/165 (66.06%), Query Frame = 2
Query:  140 FFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            FFD++IG  PAGRI   LF D+ PKT ENFR  CTGE  KG    GYKG +FHR+I  FM Q GDF  G+G+G  SIYG KF+DENF  KH+ P +LSMAN+G N+NG QFFIT A   WLD KHVVFG V   G  VV+ +E V +  + +      I +CG++
Sbjct:    6 FFDISIGGKPAGRIVFALFDDV-PKTVENFRALCTGE--KG---FGYKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEV-ESGEDVVKDMEAVGSS-SGKTSQEVLITDCGQL 162          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 87/166 (52.41%), Postives = 104/166 (62.65%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+  G    GR+ + LF    PKTAENFR   TGE  KG    GY+G  FHRVI +FMIQ GD  KGDG+G  SIYG +F DENF   H  PGLLSMAN+GP+SNG QFFIT  K  WLD  HVVFG VL  G  +V+KI    T   ++P     I + G++
Sbjct:   29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGE--KG---FGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVL-SGYDIVKKISKAETDNRDKPLEDVKIIKSGQL 188          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
CYP6_RHIOR2.044e-4151.18Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_YEAST3.487e-4153.80Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
PPID_CANAL3.487e-4151.74Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPID_CANGA5.947e-4152.63Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
CYP6_CAEEL1.014e-4052.07Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CP20A_ARATH1.325e-4052.98Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYP5_CAEEL2.952e-4054.22Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CYP11_RHIOR1.913e-3952.91Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
PPIA_ECHGR2.499e-3953.94Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIB_SCHPO2.115e-3852.41Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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