FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 67/139 (48.20%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 586
            G I  +LF    PKT ENF       Y        Y G  FHR+IK FMIQ GD   G G G  SI+G +F+DE +   +H  P  LSMAN+G N+NG QFFIT     WLDNKH VFGRV   G+ VV++I NV   P
Sbjct:  501 GDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT-KGMEVVQRISNVKVNP 629          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 67/139 (48.20%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 586
            G I ++LF    PKT ENF       Y        Y G  FHR+IK FMIQ GD   G G G  SI+G +F+DE +   +H  P  LSMAN+G N+NG QFFIT     WLDNKH VFGRV   G+ VV++I NV   P
Sbjct:  501 GDIHIKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRV-SKGMEVVQRIFNVKVNP 629          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 67/139 (48.20%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 586
            G I  +LF    PKT ENF       Y        Y G  FHR+IK FMIQ GD   G G G  SI+G +F+DE +   +H  P  LSMAN+G N+NG QFFIT     WLDNKH VFGRV   G+ VV++I NV   P
Sbjct:  501 GDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGD-PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT-KGMEVVQRISNVKVNP 629          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 65/148 (43.92%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLK-----GDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 598
            G IK+E+F +  PKTAENF   C   Y        Y    FHR I  FMIQ  + L      G G G  SI+G KF+DE     KH   G++SMANSGPN+NG QFFIT AK   LD K+ VFG+V+      +  +E V     +RP
Sbjct:   10 GDIKIEVFCEAVPKTAENFLALCASGY--------YDNNTFHRNIPGFMIQVHEHLHTGDPTGTGKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKVPVDEKHRP 149          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 64/143 (44.76%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 598
            G + +EL  DIAP+  ENF   C   Y        Y G  FHR I++FMIQ GD   G G G  SI+G  F DE N    H+G G++SMANSGP++NG QFF+       L+ KH VFG V+G GL  +  +ENV    ++RP
Sbjct:  353 GDLNIELHCDIAPRACENFITLCERGY--------YNGVAFHRSIRNFMIQGGD-PTGTGKGGESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVG-GLATLAAMENVPVDESDRP 485          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 61/153 (39.87%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  170 AGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP----KLACT 613
            AG I +EL++  APK   NF Q C   Y        Y    FHRV+ +F+IQ GD   G G+G  S++G  F DE +   +    GL++MAN+GP+ NG QFF T  + D L+NKH +FG+V GD +  + ++  V  G + RP    K+ CT
Sbjct:   21 AGEIDIELWSKEAPKACRNFVQLCLEGY--------YDNTIFHRVVPEFIIQGGD-PTGTGTGGESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTIYNILRLAEVDIGEDERPVNPHKIKCT 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIA--KHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLG--DGLLVVRKIE 568
            G + +ELFA   PK  ENF   C+  Y        Y   +FHR+IK+FM+Q GD   G G G  SI+   F DE FI+   H   G+LSMAN G N+NG QFFIT   C +LD KH +FGR++G  D L  + K+E
Sbjct:  289 GPLNLELFAPKVPKACENFITHCSNGY--------YNNTKFHRLIKNFMLQGGD-PTGTGHGGESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLE 414          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 2
Query:  173 GRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 598
            G I ++L+ + APK  +NF       Y        Y    FHR+IK+FMIQ GD L GDG+G  SI+   F+DE +   KH  P  +SMANSGPN+NG QFFIT     WLD KH +F R    GL VV +IE   T   +RP
Sbjct:  464 GDISIKLYPEEAPKAVQNFTTHAENGY--------YDNTIFHRIIKNFMIQGGDPL-GDGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYA-GLDVVHRIEQGETDKYDRP 596          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: SDC10_DANRE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Danio rerio GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  170 AGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP 598
            AG I +EL++   PK   NF Q C   Y        Y G  FHR++ +F++Q GD   G G+G  SIYG  F DE +   +    GL++MAN+GP+ NG QFF T  + D L+NKH +FG+V GD +  + ++ +VA   + RP
Sbjct:   21 AGDIDIELWSKETPKACRNFVQLCMEGY--------YDGTIFHRMVPEFIVQGGD-PTGTGTGGESIYGRPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLADVACDGDERP 155          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  170 AGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDE-NFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAEC 625
            AG I +EL++  APK   NF Q C   Y        Y    FHRV+  F++Q GD   G G+G  SIYG  F DE +   +    GL++MAN+GP+ NG QFF T  + D L+NKH +FG+V GD +  + ++  V      RP+ +  I  C
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCLEAY--------YDNTIFHRVVPGFIVQGGD-PTGTGTGGESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNSHKIRSC 164          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPWD1_PONAB1.127e-2348.20Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE1.127e-2348.20Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN1.127e-2348.20Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL3_RHIOR2.510e-2343.92Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]
PPIL2_ARATH3.279e-2344.76Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
SDC10_XENLA9.539e-2339.87Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
CYP4_CAEEL9.539e-2345.59Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
CYP9_SCHPO1.246e-2245.45Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
SDC10_DANRE4.734e-2240.28Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Da... [more]
SDC10_BOVIN1.055e-2139.22Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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