FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920564_ssr71 microsatellite FC920564_ssr71:71..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 101/168 (60.12%), Postives = 120/168 (71.43%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P VFFD+ IG    GRI MEL +DI P+TAENFR  CTG+  +G    GY  C FHRVI  FM Q GDF+KGDG+G  SIYG KFDDENF  +H G G+LSMANSGPN+NG QFFI   KCDWLD KHVVFGRV+ DG  VV+K+E+V +  + + K   TI+ CGE+
Sbjct:   18 PRVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGD--RG---FGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVV-DGQNVVKKMESVGS-KSGKVKEPVTISRCGEL 178          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 101/171 (59.06%), Postives = 120/171 (70.18%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP V+FD+T+G   AGRI MEL+AD  P+TAENFR  CTGE    K G P+ YKG  FHRVI  FM Q GDF  G+G+G  SIYG KF DENFI KHTGPG+LSMAN+G N+NG QFFI   K  WLD KHVVFG+V+ +GL VVR IE V +  + R      IA+CG++
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVV-EGLNVVRDIEKVGS-DSGRTSKPVVIADCGQI 172          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 102/168 (60.71%), Postives = 120/168 (71.43%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P VFFD+ IG   AGRI MEL +DI P+TAENFR  CTGE  +G    GY  C FHRVI  FM Q GDF+KGDG+G  SIYG KFDDENF  +H G G+LSMANSGPN+NG QFFI   KCDWLD KHVVFGRV+ DG  VV+K+E+V +  + + K    I+ CGE+
Sbjct:  112 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGE--RG---FGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVV-DGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 272          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  107 VRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+P +P+NP VFFD+TIG + AG++ MEL+A+  PKTAENFR  CTGE    K G P+ YKG  FHRVI +FM Q GDF  G+G+G  SIYG+KF DENF  KH G G LSMAN+G N+NG QFFI  A  DWLD KHVVFG V  +G+ VV+K+E  A   + +      IA CG++
Sbjct:    4 VKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVT-EGMDVVKKME-AAGSQSGKTTKPVVIANCGQL 179          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 101/168 (60.12%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            NP V+ D+ IG  PAGRI+M L +D+ P TAENFR  CT E  KG    G+KG  FHR+I  FM Q GDF   +G+G  SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC K DWLD KHVVFG V  +GL V+R+IE      + +PK    IA+CGE
Sbjct:  139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVT-EGLDVLRQIE-ARGSKDGKPKQKVIIADCGE 299          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 101/168 (60.12%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            NP V+ D+ IG  PAGRI+M L +D+ P TAENFR  CT E  KG    G+KG  FHR+I  FM Q GDF   +G+G  SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC K DWLD KHVVFG V  +GL V+R+IE      + +PK    IA+CGE
Sbjct:  139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVT-EGLDVLRQIE-AQGSKDGKPKQKVMIADCGE 299          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 101/168 (60.12%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            NP V+ D+ IG  PAGRI+M L +D+ P TAENFR  CT E  KG    G+KG  FHR+I  FM Q GDF   +G+G  SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC K DWLD KHVVFG V  +GL V+R+IE      + +PK    IA+CGE
Sbjct:  139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVT-EGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 299          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.012e-48
Identity = 100/168 (59.52%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGE 631
            NP V+ D+ IG  PAGRI+M L +D+ P TAENFR  CT E  KG    G+KG  FHR+I  FM Q GDF   +G+G  SIYG KFDDENFI KHTGPGLLSMANSGPN+NG QFF+TC K DWLD KHVVFG +  DGL V+R+IE      + +PK    I++CGE
Sbjct:  139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE--KG---FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEIT-DGLDVLRQIE-AQGSKDGKPKQKVIISDCGE 299          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.726e-48
Identity = 97/170 (57.06%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGL--PVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            P V+FD+TI   PAGRI MEL+ D  P+TAENFR  CTGE   GG   P+ +KG +FHRVI +FM Q GDF  G+G+G  SIYG KF+DENF  KHTGPG+LSMAN+G N+NG QFFI   K DWLD KHVVFG+V+ +GL VV+ IE V +  + +P     +A+CG++
Sbjct:    4 PKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVV-EGLDVVKAIEKVGSS-SGKPTKPVVVADCGQL 171          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.255e-48
Identity = 99/171 (57.89%), Postives = 118/171 (69.01%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEY--RKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFF+V IG    G+I  ELFAD  PKTAENFR  CTGE    + G+P+ +KG  FHRVIKDFM+Q GDF  G+G+G  SIYG KF DE F   H  P LLSMAN+GPN+NG QFFIT  +   LDNKHVVFG++L  G  +VR+IE   TG  +RPK   TI +CGE+
Sbjct:    3 NPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLL-SGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIE_SCHJA4.543e-4960.12Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CP19A_ARATH4.543e-4959.06Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIE_SCHMA5.933e-4960.71Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIA_DICDI7.749e-4955.62Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIE_PONAB1.012e-4860.12Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE1.012e-4860.12Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIE_HUMAN1.012e-4860.12Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_BOVIN1.012e-4859.52Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
CP18C_ARATH1.726e-4857.06Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
PPID_YARLI2.255e-4857.89Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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