FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920564_ssr71 microsatellite FC920564_ssr71:71..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 98/169 (57.99%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATG-PNNRPKLACTIAECGEM 634
            VFFD+TIG+  AGRI MELF ++ PKTAENFR  CTGE    K G P+ +KG  FHRVI DFM Q GDF +G+G+G  SIYG KF DENF  KH  PGLLSMAN+GPN+NG QFF+T   C WLD KHVVFG V+ +GL ++ ++E  A G  + + K A  I++CGE+
Sbjct:    5 VFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVV-EGLEILEQLE--ANGSQSGQTKQAIVISDCGEI 170          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 96/171 (56.14%), Postives = 120/171 (70.18%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+T+G  PAGRI MEL+A+  PKTAENFR  CTGE    K G P+ YKG  FHRVI +FM Q GDF +G+G+G  SIYG KF DE F+ K   PG+LSMAN+GPN+NG QFFI      WLD KHVVFG+V+ +G+ VV+ IE V T   +  K+   +A+CG++
Sbjct:    3 NPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVV-EGMDVVKAIEKVGTRNGSTSKVV-KVADCGQL 171          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.119e-47
Identity = 97/171 (56.73%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP V+FD+T+G   AGRI MEL+AD  P+TAENFR  CTGE    K G P+ YKG  FHRVI  FM Q GDF  G+G+G  SIYG KF DENF+ KHTGPG+LSM N+G N+NG QFFI   K  WLD KHVVFG+V+ +G+ VVR IE V +      K   T  +CG++
Sbjct:    3 NPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVV-EGMDVVRDIEKVGSDSGRTSKKVVT-CDCGQL 171          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 99/171 (57.89%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+++   P GRI+MELFAD  P TAENFR  CTGE   G  G P+ +KG  FHRVI  FM Q GDF   +G+G  SIYG KF DENFI KHTG G+LSMANSGPN+NG QFFI   K  WLD KHVVFG+V+  GL VV+ IE V +      K+  TI +CG++
Sbjct:    3 NPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVV-KGLDVVKAIEKVGSDSGKTSKVV-TITDCGQL 171          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 96/169 (56.80%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQI 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.252e-47
Identity = 96/169 (56.80%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQI 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KF+DENF+ KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFGRV  +G+ +V  +E+  +  N +     TIA CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRV-KEGMSIVEAMEHFGS-ENGKTSKKITIANCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+T    P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TI++CG++
Sbjct:    3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITISDCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 96/169 (56.80%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NPIVFFD+ +   P GR+  +LFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPIVFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQI 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 95/169 (56.21%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDENFI KHTGPG+LSMAN+GPN+NG QFFI   K +WLD KHVVFG+V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPI2_SYNY33.846e-4857.99Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CYPH_MAIZE6.560e-4856.14Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_BRANA1.119e-4756.73Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP18D_ARATH1.909e-4757.89Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
PPIA_PIG4.252e-4756.80Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN4.252e-4756.80Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIA_RABIT5.554e-4756.21Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_MOUSE5.554e-4756.21Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA5.554e-4756.80Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_SAGOE9.473e-4756.21Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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