FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920564_ssr71 microsatellite FC920564_ssr71:71..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.473e-47
Identity = 95/169 (56.21%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+ +   P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KFDDENFI KHTGPG+LSMAN+GPN+NG QFFI   K +WLD KHVVFG+V  +G+ +V  +E   +  N +     TIA+CG++
Sbjct:    3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 102/172 (59.30%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            K P VFFD+ IG    GRI  ELF D+ PKTAENFR  CTGE   G  G P+ +KG  FHRVIK FMIQ GDF   +G+G  SIYG KF DENF  KH  P LLSMANSGP +NG QFFIT      LD KHVVFG V+ +G  VVRKIEN+ T   ++P    TIAECGE+
Sbjct:    5 KRPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVI-NGKSVVRKIENMPT-QADKPTTDVTIAECGEL 174          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD+T    P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TI++CG++
Sbjct:    3 NPTVFFDITADGEPLGRVCFELFADKVPKTAENFRALSTGE--KG---FGYKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMSIVEAMERFGS-RNGKTSKKITISDCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 100/168 (59.52%), Postives = 115/168 (68.45%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD+TIG   AGRI  EL+ DI PKTAENFR  CTGE   G  G P+ YKG  FHRVIK FMIQ GDF  G+G+G  SIYG KF+DENF  KH  P LLSMAN+GP +NG QFF+T      LD KHVVFG VL  G  VVR+IEN+ T   ++P     IA+CGE+
Sbjct:   14 VFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVL-SGKSVVRQIENLKT-QGDKPTKDAVIADCGEL 179          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 94/169 (55.62%), Postives = 117/169 (69.23%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP VFFD++    P GR+  ELFAD  PKTAENFR   TGE  KG    GYKG  FHR+I  FM Q GDF + +G+G  SIYG KF+DENFI KHTGPG+LSMAN+GPN+NG QFFI  AK +WLD KHVVFG+V  +G+ +V  +E   +  N +     TI++CG++
Sbjct:    3 NPTVFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGE--KG---FGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV-KEGMNIVEAMERFGS-RNGKTSKKITISDCGQL 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVA--TGPNNRPKLACTIAECGEM 634
            +P VFFD++    P GRI MEL +D+ PKTAENFR  CTGE  KG    GYKG +FHRVI +FM Q GDF   +G+G  SIYG KF+DENF  KHTGPG+L MAN+GPN+NG QFFIT AK  WLDN+HVVFG V+ +G+ VV+K+E++   +G  N+ K+A  + +CG++
Sbjct:    3 HPRVFFDMSADGQPVGRIVMELRSDVVPKTAENFRALCTGE--KG---FGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVV-EGMDVVKKLESLGSQSGKTNK-KIA--VVDCGQI 164          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 95/167 (56.89%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG-GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+  G  P GRI M L+    PKTAENFR   TG+   G  L  GY+G  FHR+IK+FMIQ GDF KGDG+G  SIYG KF DENF  KHTGPG+LSMAN+G ++NG QFFI   K  WLDN+HVVFG VL +G+ VV  +ENV T   ++P    TIA  GE+
Sbjct:   47 VYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVL-EGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 99/167 (59.28%), Postives = 116/167 (69.46%), Query Frame = 2
Query:  140 FFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            FFD+TIG  PAGRI MELF D+ PKTAENFR  CTGE   G  G  + Y+G  FHRVI  FM+Q GDF  G+G G  SIYG KF DENFI KHT PGLLSMAN+GP +NG QFFIT      LD KHVVFG+V+ +G+ VVRKIE   T   ++P     IA+CG++
Sbjct:    5 FFDMTIGGQPAGRIIMELFPDV-PKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVV-EGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 94/166 (56.63%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+  G    G+I M L+ D+ PKT ENFR  CTGE  KG     YKG +FHRVIK+FMIQ GDF +GDG+G  SIYG KF DENF  KHT P  LSMAN+G ++NG QFFIT     WLD KHVVFG VL +G  +V  IEN  TG  + PK+  TIA+ GE+
Sbjct:   34 VYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-----YKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVL-EGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIA_CERAE9.473e-4756.21Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_AOTTR9.473e-4756.21Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPID_EMENI1.237e-4659.30Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPIA_RAT1.237e-4656.21Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPID_NEUCR1.616e-4659.5241 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIA_CRIGR2.110e-4655.62Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_BLAGE1.047e-4556.73Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIB_CRYNE1.787e-4556.89Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYPX_USEUD1.787e-4559.28Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIB_YARLI2.333e-4556.63Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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