FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920564_ssr71 microsatellite FC920564_ssr71:71..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.333e-45
Identity = 94/164 (57.32%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 628
            VFFD+ +G   AGR+ + LF    PKT ENF    TGE  KG    G+KG +FHRVIKDFMIQ GDF +GDG+G  SIYG +F DENF  KH GPG +SMAN+G ++NG QFFIT  K  WLD KHVVFG+VL +G+ VVRK+EN  T   ++P    TIA+CG
Sbjct:   37 VFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGE--KG---FGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL-EGMDVVRKVENTKTDSRDKPLKDVTIADCG 194          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 97/170 (57.06%), Postives = 110/170 (64.71%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            +NP VFFD+ IG   AGRI M L AD+ PKTAENFRQ CT E        GYKGC FHRVI +FM Q GDF   +G+G  SIYG KF+DENF  KH   G LSMANSG N+NG QFFI   K DWLDNKHVVFG V+  G  VVRK+E   +  +  P     I  CGE+
Sbjct:  137 RNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQG-----YGYKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVI-SGAEVVRKMERCGS-KSGTPSQKIVIYSCGEL 299          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 91/166 (54.82%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFD+ +   P GRI + LF    PKT ENF+Q   G   K G    YKG  FHRVIK FMIQ GDF   DG+G  SIYG +F DENF  KH G G LSMAN+GPN+NG QFFIT  +  WLD KHVVFG+V+ +G+ VVR+IEN+ T   +RP  +  IA CG +
Sbjct:   34 VFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLSIGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVV-EGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 94/169 (55.62%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP+V+ DV     P GR+ +EL AD+ PKTAENFR  CTGE  KG    GYKG  FHRVI  FM QAGDF   +G+G  SIYG +F DENF  KH GPG+LSMAN+GPN+NG QFFI   K DWLD KHVVFG V  +G+ VV+KIE+  +  + R      I +CG++
Sbjct:   45 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV-KEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 206          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 95/170 (55.88%), Postives = 113/170 (66.47%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            PIVFFD+ IG   AGR+   L++D+ PKTAENFR  CTGE   G  G P+ YKG  FHRVIK FM Q GDF  G+G+G  SIYG KF+DE F   H+ P LLSMAN+GPN+NG QFFIT +    LD KHVVFG V+  G  VVR IEN      + PK    IA+CG++
Sbjct:    5 PIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVI-KGRSVVRTIENNPATNGDVPKEPVVIADCGQL 173          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 94/173 (54.34%), Postives = 117/173 (67.63%), Query Frame = 2
Query:  119 NPK-NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NPK    V+FD+  G    GRI + L+ ++ PKT ENFR   TGE  KG    GYK  +FHRVIKDFMIQ GDF +GDG+G  SIYG +F DENF  +HTGPG+LSMAN+G ++NG QFFIT     WLD +HVVFG+V+ +G+ VV  IE   T P +RP     IA+CGE+
Sbjct:   25 NPKVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGE--KG---YGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVI-EGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 92/172 (53.49%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  131 PIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG--GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM*N 640
            P VFFDV +   P+GR+  +LF+D  PKTAENFR  CTGE   G  G P+ YKG  FHR+I  FM Q GDF  G+G G  SIYGHKF+DENF  KHTG G+LSMAN+GPN+NG QFFIT  K  WLD  H VFG+++ +G  V+  +E   T  +  P     I +CGE+ N
Sbjct:    7 PKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLV-EGNQVLEILEQHGT-QSGMPTAKVEIVDCGEIKN 176          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 91/168 (54.17%), Postives = 113/168 (67.26%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGE--YRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFF +  G  P GR+  EL+ DI PKTAENFR  CTGE    K G P+ YKG  FHRVIK+FM+Q GDF  G G G  SIYG  F+DENF+ KH   G LSMAN+G N+NG QFFIT A+   L+  H VFG V+ +G  +V+K+EN  T  ++RPK AC I +CG++
Sbjct:    9 VFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVV-EGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.512e-44
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            K   V+ D+ IG   AGRI++EL  D+ PKTAENFR  CTGE        GYK   FHR+I  FM Q GDF KG+G+G  SIYG KF+DENF+ KHTGPG LSMAN+G N+NG QFFI   K  WLD KHVVFG+V+  G+ VVR++E   +  + +P     I +CGE+
Sbjct:  153 KKSRVYLDIQIGNTLAGRIEIELRGDVVPKTAENFRALCTGE-----AGFGYKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVV-SGMNVVREMERCGSA-SGKPSKRVVIVDCGEL 315          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 94/170 (55.29%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  125 KNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            +NP+V+ DV     P GR+ +EL AD+ PKTAENFR  CTGE  KG    GYKG  FHRVI  FM QAGDF   +G+G  SIYG +F DENF  KH GPG+LSMAN+GPN+NG QFFI   K DWLD KHVVFG V  +G+ VV+KIE+  +      K    I +CG++
Sbjct:   43 QNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE--KG---FGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV-KEGMDVVKKIESFGSKSGKTSK-KIVITDCGQL 205          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIB_CHICK2.333e-4557.32Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIE_DROME3.980e-4557.06Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIB_SCHJA3.980e-4554.82Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIF_HUMAN5.198e-4555.62Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_AMAMU5.198e-4555.88Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_ORPSP5.198e-4554.34Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CYP5_RHIOR8.866e-4553.49Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPID_DICDI1.158e-4454.17Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIE_RHIOR1.512e-4453.53Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIF_RAT1.975e-4455.29Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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