FC920564

Overview
NameFC920564
Unique NameFC920564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 92/166 (55.42%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FDV     P GR+  +L+ DI PKTAENFR  CTGE  KG    GY G  FHRVI DFM+Q GDF  G+G+G  SIYG KF DENF   H  PGLLSMAN+GPN+NG QFFIT   C WLD KHVVFG V+ DG  +V+K+E++ + P+   K    +A+ GE+
Sbjct:    4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE--KG---FGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVV-DGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 91/166 (54.82%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+ IG    GR+ + LF    PKT +NF    TGE  KG    GYK  +FHRVIKDFMIQ GDF +GDG+G  SIYG +F DENF  KH GPG +SMAN+G ++NG QFFIT  K  WLD KHVVFG+VL +G+ VVRK+E+  T   ++P    TIA+CG++
Sbjct:   46 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE--KG---FGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVL-EGMDVVRKVESTKTDGRDKPLKDVTIADCGKI 205          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 95/181 (52.49%), Postives = 115/181 (63.54%), Query Frame = 2
Query:  104 HVRPPNPKNPI----VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            H     P+ P     VFFD+  G  P GR+ + L+    PKTAENFR   TGE  KG    GY+G  FHRVIKDFMIQ GDF +GDG+G  SIYG KF DENF  +HT  GLLSMAN+G ++NG QFFIT     WLD +HVVFG VL +G  +V +IENV  G ++RP     I + GE+
Sbjct:   22 HAEDAQPRGPKITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGE--KG---FGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVL-EGYEIVAQIENVPKGRSDRPVETVKIVKSGEL 196          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKG---GLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VF DVTI    AGRI MEL+ DIAP+T  NF   CTG    G   G P+ YKG  FHRVIK+FMIQ GDF KGDG+G  SIYG  FDDE F+ KH  P ++SMAN GPN+NG QFFIT      L+N HVVFG+V+  G  VV KIE + T   NRP     I  CGE+
Sbjct:    9 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVV-SGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 96/166 (57.83%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFDV IG    GRI + LF ++ PKT ENF    TGE  KG    GYKG  FHRVIKDFMIQ GDF   DG+G  SIYG  F DENF  KH G G +SMAN+GP++NG QFFIT  K  WLD KHVVFG+VL DG+ VV  IE  AT  ++RP   CTI   G++
Sbjct:   40 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE--KG---YGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVL-DGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 199          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 91/167 (54.49%), Postives = 116/167 (69.46%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP-NNRPKLACTIAECGEM 634
            +FFD+ IG   AGRI + LF D  PKT ENF+   TG   KG    GY+G  FHR+I +FMIQ GDF +G+G+G  SIYG KF+DE+F  KH GPG+LSMAN+GPN+NG QFFI      WLDN+HVVFG V+ +GL VV+++E+  T   +N PK  C IA+ GE+
Sbjct:   84 IFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGA--KG---YGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVI-EGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.852e-43
Identity = 90/164 (54.88%), Postives = 110/164 (67.07%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECG 628
            ++FD+  G    GRI + L+    PKTAENF+Q  TGE        GYKG  FHRVIK FMIQ GDF   DG+G  SIYG++F DENF  +H+ PGLLSMAN+G ++NG QFFIT     WLD KHVVFGRVL +G+ VV KIEN  TG  ++P +   IA+CG
Sbjct:   36 IYFDIKQGDESLGRIVLGLYGKTVPKTAENFKQLATGENG-----YGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVL-EGMDVVTKIENTPTGSRSKPSVDVVIADCG 193          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 96/169 (56.80%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  128 NPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            NP+VFFDV     P GRI MELF++I P+TAENFR  CTGE  KG    G+K   FHRV+ DF+ Q GD  K +G+G  SIYG KFDDENF  KHTGPGLLSMAN G N+N  QFFIT  K + LD KHVVFG V  DG+  VRKIE+  +   +  +  C I ECG++
Sbjct: 2892 NPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGE--KG---FGFKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFV-KDGMDTVRKIESFGSPKGSVSRRIC-ITECGQL 3053          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 94/166 (56.63%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            VFFDV IG    GRI + LF  + PKT ENF    TGE  KG    GYKG +FHRVIKDFMIQ GD   GDG+G  SIYG  F DENF  KH G G +SMAN+GP++NG QFFIT  K  WLD KHVVFG+V+ DG+ VV  IE  AT  ++RP   C+I   G++
Sbjct:   40 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGE--KG---YGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVI-DGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199          
BLAST of FC920564 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 95/167 (56.89%), Postives = 109/167 (65.27%), Query Frame = 2
Query:  137 VFFDVTIGTIPAGRIKMELFADIAPKTAENFRQFCTGEYRKGGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCTSIYGHKFDDENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKCDWLDNKHVVFGRVL-GDGLLVVRKIENVATGPNNRPKLACTIAECGEM 634
            V+FD+TI   PAGRI   LF D+ PKTAENFR   TGE  KG    GY G  FHRVI DFM+Q GDF +GDG+G  SIYG KF DENF  KH   GLLSMAN+G N+NG QFFIT     WLD KHVVFG V   D + +VRKIE + +  + R     TIAE G +
Sbjct:    5 VYFDITIDDAPAGRITFNLFDDVVPKTAENFRALATGE--KG---FGYAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSS-SGRTSAKVTIAESGAL 165          
The following BLAST results are available for this feature:
BLAST of FC920564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
CYPH_YEAST7.506e-4455.42Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIB_BOVIN1.672e-4354.82Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_ASPNG1.672e-4352.49Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
CYP1_BRUMA1.672e-4356.21Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIC_MOUSE2.184e-4357.83Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
CYPB_VICFA2.184e-4354.49Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB1_RHIOR2.852e-4354.88Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
RBP2_MOUSE3.725e-4356.80E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIC_HUMAN3.725e-4356.63Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIA_STRCH3.725e-4356.89Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]

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Properties
Property NameValue
Genbank descriptionC32010A06EF RVDevelop1 Citrus clementina cDNA clone C32010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920564 ID=FC920564; Name=FC920564; organism=Citrus clementina; type=EST; length=697bp
GGAGAGTCCGAAGTCGAAGCCCTCAGTAGCTTGTAGAGTTAAGGAAGTGC
GAGAGAAATTGATGGCATCCGGAGGAGGAGGAGGAGGAGGAAGTGTGGAG
TGGCACGTGCGGCCTCCAAACCCAAAAAACCCAATCGTATTTTTCGATGT
CACAATCGGTACCATCCCCGCTGGTCGAATCAAGATGGAGCTCTTCGCCG
ACATCGCCCCTAAAACCGCCGAAAATTTTAGGCAGTTCTGCACCGGCGAG
TACAGAAAGGGAGGATTGCCTGTTGGTTACAAGGGATGCCAGTTCCATAG
GGTGATCAAGGATTTTATGATTCAAGCTGGTGATTTTCTGAAGGGTGATG
GTAGTGGATGTACTTCAATTTATGGACATAAGTTTGATGATGAAAATTTT
ATTGCTAAACACACTGGTCCAGGTCTATTATCTATGGCAAACAGCGGACC
AAATTCTAATGGGTGCCAGTTCTTTATCACTTGTGCAAAATGTGATTGGC
TTGACAATAAGCACGTTGTATTTGGGAGGGTGCTTGGAGATGGTCTTTTG
GTTGTCAGGAAGATCGAGAATGTGGCCACCGGACCCAACAACCGGCCTAA
ACTGGCATGCACTATCGCAGAATGTGGAGAAATGTGAAACTGATAACTTG
AAAACAATTGTGGCATTGCTAAGGACTGATAAAAAAGAAATATCCGT
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