FC920573

Overview
NameFC920573
Unique NameFC920573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC920573 vs. ExPASy Swiss-Prot
Match: DFRA_SYNY3 (Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803) GN=dfrA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 65/205 (31.71%), Postives = 109/205 (53.17%), Query Frame = 2 
Query:   71 VTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIWYSMSKTLAEKAAWEFAEKNGTDVVAIHPATSLGPF---PQPYVNASGAVLQRLL 676
            VTG  GF+G  +VR LLE+GY  + A +   +   +L +LP         +    L++  + + ++GC+G+FH+A+  +L   KD E  L    V GT N+L  A+K G+ R V TSS+++I    +   G+  DE+  + ++        Y  SK  AE+ A   A++ G D+V ++P+T +GP+   P P    +G ++ R L
Sbjct:   15 VTGGTGFVGANLVRHLLEQGY-QVRALVRASSRPDNLQNLPID-------WVVGDLNDGDLHQQMQGCQGLFHVAAHYSLWQ-KDREA-LYRSNVLGTRNILACAQKAGIERTVYTSSVAAIGVKGD---GQRADESYQSPVEKLIGA---YKQSKYWAEQEALTAAQQ-GQDIVIVNPSTPIGPWDIKPTP----TGEIILRFL 198
The following BLAST results are available for this feature:
BLAST of FC920573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DFRA_SYNY32.895e-1331.71Putative dihydroflavonol-4-reductase OS=Synechocys... [more]

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Properties
Property NameValue
Genbank descriptionC32010B05EF RVDevelop1 Citrus clementina cDNA clone C32010B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920573 ID=FC920573; Name=FC920573; organism=Citrus clementina; type=EST; length=676bp
GACAGTTCACAAAATCGTCACATCATTAAAGAGAAAAAGGATGAACGGGC
CAGAAAAGGAAGTAGTTTGCGTGACTGGAGCCAACGGGTTCATCGGAACA
TGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACGCTGC
CATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCA
CCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAAGCA
ATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCC
TAACACCCTGGATGATCCCAAGGACCCCGAAAAGGAGCTGCTCATTCCTG
CTGTTCAAGGCACCCTCAATGTCTTAGAGGCTGCCAAGAAGTTTGGTGTC
AGGCGTGTGGTGCTCACCAGCTCCATTTCTTCCATTGTGCCTAATCCCAA
TTGGCCTCAAGGCAAGGTCATTGATGAAACTTCTTGGACCGACCTTGACT
TTTGCAAGTCTCACAAGATATGGTATTCAATGTCAAAGACACTAGCAGAA
AAAGCAGCATGGGAATTTGCAGAGAAGAATGGAACGGATGTGGTGGCAAT
CCATCCAGCCACATCTCTTGGGCCATTTCCGCAGCCTTACGTGAACGCGA
GCGGAGCTGTGCTGCAGCGTTTGTTG
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