FC920575

Overview
NameFC920575
Unique NameFC920575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_DELAS (Adenosylhomocysteinase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.908e-40
Identity = 87/159 (54.72%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  174 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGG----GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTD 638
            + D+S A +GR EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGE+L +YW  T +  ++G  G    GP++I+DDGGDAT+L+H G++AE   +    L +PAS +
Sbjct:   14 IADISLAAWGRKEILIAETEMPGLMATREEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGAEVRWASCNIFSTQDHAAAAIAETGTPVFAIKGESLADYWDYTHRIFEFGAAGTEGEGPNMILDDGGDATMLLHLGMRAE---KDLSVLDNPASEE 169          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_CHRVO (Adenosylhomocysteinase OS=Chromobacterium violaceum GN=ahcY PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.908e-40
Identity = 81/143 (56.64%), Postives = 101/143 (70.63%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            +F V D++ A +GR E+ +AE EMPGLMA R E+  +QP +GA+I GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH              +KGE+L EYW  + K  +W  G   ++I+DDGGDATLL+  G KAE+
Sbjct:    6 DFHVADIALAGWGRKELNIAETEMPGLMATRDEYHAAQPLRGARIAGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAFKGESLDEYWEFSHKIFEWPEGQPANMILDDGGDATLLLMLGSKAEK 148          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_CANAL (Adenosylhomocysteinase OS=Candida albicans GN=SAH1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.908e-40
Identity = 90/163 (55.21%), Postives = 106/163 (65.03%), Query Frame = 3
Query:  150 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKAL-DWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST 635
            SA    +KV D+S A FGR +IEL+E EMPGLM  R ++GPSQP KGA+I G LHMTIQTAVLIETL ALGAEV W SCNIFSTQDH              WKGET +EY WC E+ L  +  G   +LI+DDGGD T L+HE  K  E+ E    L +  +T
Sbjct:    3 SAPATNYKVADISLAAFGRKDIELSENEMPGLMYIRKKYGPSQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIFSTQDHAAAAIAAAGVPVFAWKGETEEEYQWCIEQQLFAFKDGKKLNLILDDGGDLTSLVHE--KYPEMLEDCYGLSEETTT 163          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_PROM4 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ahcY PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.410e-40
Identity = 81/143 (56.64%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            E+++ D+  A+FGR E+ +AE EMPGLMA R ++   +P KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQDH               KGETL EYW  T + L+WG    P++I+DDGGDAT L+  G KAE+
Sbjct:   16 EYEIADIELAEFGRKELAIAEKEMPGLMALREKYHKEKPLKGARIAGSLHMTIQTAVLIETLVALGAQVRWASCNIFSTQDHAAAAIASSGIPVFAKKGETLDEYWAYTHRILEWGDQETPNMILDDGGDATGLVILGSKAEQ 158          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_BURPP (Adenosylhomocysteinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ahcY PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.410e-40
Identity = 83/155 (53.55%), Postives = 105/155 (67.74%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            M  +V  S + ++F V D+S AD+GR E+ +AE EMPGL+  R E+   QP KGA+I GSLHMTIQT VLIETLTALGA+VRW SCNIFSTQDH              +KGE+L EYW  + +  +W  G   ++I+DDGGDATLL+  G KAE+
Sbjct:    1 MNAAVIDSKNSQDFVVADMSLADWGRKELNIAETEMPGLVQTREEYKAQQPLKGARIAGSLHMTIQTGVLIETLTALGADVRWASCNIFSTQDHAAAAIAKAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEK 155          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_CORDI (Adenosylhomocysteinase OS=Corynebacterium diphtheriae GN=ahcY PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 88/182 (48.35%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGL 683
            ++ VKDLS A+ GR +I LAE EMPGLM  R E+   QP  GA+ITGS+HMT+QTAVLIETL ALGA+VRW SCNIFSTQD                        WKGETL+EYW C +K   WG    P++I+DDGGDAT+ +  G +    +E+ G +P     D+ E+Q  L ++R  L
Sbjct:    5 DYNVKDLSLAEAGRHQIRLAEYEMPGLMQLREEYQQEQPLAGARITGSIHMTVQTAVLIETLVALGAQVRWASCNIFSTQDEAAAAVVVGPHGTPEDPQGVPVFAWKGETLEEYWDCVDKIFSWG-DELPNMILDDGGDATMAVIRGKQ----FEEAGMVPPVEEGDSDEYQAFLGMLRKTL 181          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_ZYMMO (Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 85/160 (53.12%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  174 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQ 653
            V+D+S A +GR EI++AE EMPGLMA R E+   +P KGA+ITGSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQDH               KGE+L+EYW   ++  DWG G   ++I+DDGGDAT+ +  G K E   E     P P + +   FQ
Sbjct:    8 VRDISLAGWGRKEIDIAEGEMPGLMALREEYAAKKPLKGARITGSLHMTIQTAVLIETLVDLGAEVRWASCNIFSTQDHAAAAIAEQNIPVFAVKGESLEEYWDYVDRIFDWGKGETANMILDDGGDATMFVLWGAKLEAGVE----FPAPQNEEEEIFQ 163          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_BURXL (Adenosylhomocysteinase OS=Burkholderia xenovorans (strain LB400) GN=ahcY PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 83/155 (53.55%), Postives = 105/155 (67.74%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            M  +V  S + ++F V D+S AD+GR E+ +AE EMPGL+  R E+   QP KGA+I GSLHMTIQT VLIETLTALGA+VRW SCNIFSTQDH              +KGE+L EYW  + +  +W  G   ++I+DDGGDATLL+  G KAE+
Sbjct:    1 MNAAVIDSKNSQDFIVADMSLADWGRKELNIAETEMPGLVQTREEYKVQQPLKGARIAGSLHMTIQTGVLIETLTALGADVRWASCNIFSTQDHAAAAIAKAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEK 155          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_PROM9 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ahcY PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 86/155 (55.48%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            M ++    +S   + V D+S +DFGR EI++AE EMPGLMA R ++   +P KGAKI GSLHMTIQTAVLIETL  LGAEV+W SCNIFSTQDH               KGETL EYW  T   LDWG    P++I+DDGGDAT L+  G KAE+
Sbjct:    1 MVIANSVKSSTTNYVVADISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAEVKWASCNIFSTQDHAAAAIADQGISVYAKKGETLDEYWQYTHCILDWG-ADSPNMILDDGGDATGLLILGSKAEK 154          
BLAST of FC920575 vs. ExPASy Swiss-Prot
Match: SAHH_PROM2 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ahcY PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 86/155 (55.48%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            M +S     S   F + D+S +DFGR EI++AE EMPGLMA R ++   +P KGAKI GSLHMTIQTAVLIETL  LGA+V+W SCNIFSTQDH               KGETL EYW  T   LDWG    P++I+DDGGDAT L+  G KAE+
Sbjct:    1 MVISNSIKTSVPHFVISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAQVKWASCNIFSTQDHAAAAIADRGIPVFAKKGETLDEYWQYTHYILDWG-SDSPNMILDDGGDATGLLILGSKAEK 154          
The following BLAST results are available for this feature:
BLAST of FC920575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_DELAS4.908e-4054.72Adenosylhomocysteinase OS=Delftia acidovorans (str... [more]
SAHH_CHRVO4.908e-4056.64Adenosylhomocysteinase OS=Chromobacterium violaceu... [more]
SAHH_CANAL4.908e-4055.21Adenosylhomocysteinase OS=Candida albicans GN=SAH1... [more]
SAHH_PROM46.410e-4056.64Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_BURPP6.410e-4053.55Adenosylhomocysteinase OS=Burkholderia phytofirman... [more]
SAHH_CORDI8.371e-4048.35Adenosylhomocysteinase OS=Corynebacterium diphther... [more]
SAHH_ZYMMO1.093e-3953.13Adenosylhomocysteinase OS=Zymomonas mobilis GN=ahc... [more]
SAHH_BURXL1.093e-3953.55Adenosylhomocysteinase OS=Burkholderia xenovorans ... [more]
SAHH_PROM91.428e-3955.48Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PROM21.428e-3955.48Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010B10EF RVDevelop1 Citrus clementina cDNA clone C32010B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920575 ID=FC920575; Name=FC920575; organism=Citrus clementina; type=EST; length=691bp
GGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGT
TTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTT
TTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAAT
CCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTC
GGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGC
TTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCA
CCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTC
ACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAAC
CCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTG
CCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCC
CTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGG
TGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACG
AGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGTTT
CAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
back to top