FC920582

Overview
NameFC920582
Unique NameFC920582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  375 VAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            V V+TG S G+GRA+A   G+   KV++NY  + +EA +  KE+E +GGQA+   GDV+KE DV ++++TA+  +GT+D++IN
Sbjct:    9 VVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMIN 91          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  375 VAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            V V+TG S G+GRA+A   G+   KV++NY  + +EA +  KE+E +GGQA+   GDV+KE DV ++++TA+  +GT+D++IN
Sbjct:    9 VVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMIN 91          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  369 APVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            A VA+VTGASRGIG+A A +L   G KV+VNYA+SS  A+ V  EI A+GG+A+    +V+   +V+ +IKT +D +  +D+L+N
Sbjct:    6 AQVALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIAVQANVANADEVDQLIKTTLDKFSRIDVLVN 90          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  378 AVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            A+VTGASRGIGR++A  L K+G  V+VNY+ +  +A EV  EI++ G +A+    DVS   DV++MIK  +  + T+DIL+N
Sbjct:    7 AIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFSTIDILVN 88          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 35/88 (39.77%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  360 NVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +++  V  +TGA+ G+G+A+A   GK   KV++NY  + ++  EV +E+  +GG+A+   GDV+KE DV+++++TA+  +GT+DI+IN
Sbjct:    4 DLKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMIN 91          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  354 VQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +  +E  VAVVTGAS+GIG A+A +L K G  V+VNYA S   A+ V + I A+GG+A+    DVS+      +++ AV  +G +D+L+N
Sbjct:    1 MSKLEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVN 90          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  378 AVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            A+VTGASRGIGR++A  L + G  V VNYA S  +AE V +EI+A G ++     +V+K  +V+ MIK  V  +G+VD+L+N
Sbjct:    5 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVN 86          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  378 AVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            A+VTGASRGIGR++A  L + G  V VNYA S  +AE V +EI+A G ++     +V+K  +V+ MIK  V  +G+VD+L+N
Sbjct:    5 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVN 86          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: T4HR_MAGGR (Tetrahydroxynaphthalene reductase OS=Magnaporthe grisea GN=MGG_02252 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  360 NVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDIL 617
            ++E  VA+VTGA RGIGR +A  LG+ GCKV+VNYA S++ AEEV   I+ +G  A     +V    D+  M + AV  +G +DI+
Sbjct:   26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIV 111          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 33/89 (37.08%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  357 QNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +++    A+VTG+S+GIG+A+A   GK    V+VNY      A+E  + I+ +GG+A++   DVSKE  +++++ TA++ +GT+D+++N
Sbjct:    3 KDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVN 91          
The following BLAST results are available for this feature:
BLAST of FC920582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHG4_BACME3.439e-1645.78Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
DHG3_BACME3.439e-1645.78Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
FABG1_SYNY31.001e-1548.243-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
FABG_BACSU2.912e-1547.563-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
DHG_BACSU8.472e-1539.77Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
Y182_METEA1.445e-1443.33Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
FABG_STAES7.172e-1447.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ7.172e-1447.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
T4HR_MAGGR1.223e-1345.35Tetrahydroxynaphthalene reductase OS=Magnaporthe g... [more]
DHG2_BACSU3.559e-1337.08Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32010C08EF RVDevelop1 Citrus clementina cDNA clone C32010C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920582 ID=FC920582; Name=FC920582; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTGGTTGGCTTGTATAAAAGGGAGCGAGCAAGGAAGC
GTCTCTCGAAGCCATTACCACAAAACTTCATTTCTGGCTACCCTCTTGTC
TTGGATTATTTCGTTTCGCGGAAAACCTCTCATGGCTGCCGTCGCCGGAT
CCAACATTGTCGCGTTCAAATCGGCGGCTACTTCCGCGAAATTCGGTGAC
CGAAAAATCCCGCAGTTTCGTCAATGGTCTCCTGTTCAGGTTAAGGCTCT
GCCTCGCCCTTCCGTTGAGCTCAAGAGTAGATGGAACAGCTCCTTCCCTT
CTTCTGGAATCAGAGCTCAGGTTGCCACCATAGAACAAGCAACCAATGAA
GCAGTACAAAATGTGGAAGCTCCTGTGGCTGTGGTGACTGGTGCCTCTAG
GGGTATTGGCAGAGCAGTAGCGACGTCCTTGGGAAAAGCAGGTTGCAAGG
TCCTGGTAAATTATGCTAGGTCATCAAAGGAAGCCGAAGAAGTTTGCAAA
GAGATTGAGGCATCTGGCGGTCAGGCTCTTACTTTTGGTGGAGATGTTTC
CAAAGAAGCTGATGTGGAATCAATGATCAAAACTGCTGTCGATGCTTGGG
GAACTGTTGATATATTGATTAACATGCANGAATCACTAGAGATACATTGC
TCAT
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