FC920582

Overview
NameFC920582
Unique NameFC920582
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2507 contig Ccv1_Contig2507:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHK2_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 2 OS=Streptomyces violaceoruber GN=gra-orf6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  366 EAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            EAPVA+VTG+S GIG+ VA  L   G +V+VN ARS ++ E+      A+   AL    DVS+EAD   ++ TAV+ +G +D+L+N
Sbjct:    7 EAPVALVTGSSSGIGQTVAQRLAAEGYRVVVNSARSVEDGEKTA----AALPDALYVRADVSEEADARRLVDTAVEHYGRLDVLVN 88          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: VER1_ASPPA (Versicolorin reductase OS=Aspergillus parasiticus GN=ver1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  363 VEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDIL 617
            ++  VA+VTGA RGIG A+A +LG+ G KV+VNYA S + AE+V ++I+A+G  A+    DV        ++   V  +G +DI+
Sbjct:    7 LDGKVALVTGAGRGIGAAIAVALGERGAKVVVNYAHSREAAEKVVEQIKANGTDAIAIQADVGDPEATAKLMAETVRHFGYLDIV 91          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 33/90 (36.67%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  357 QNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKE-IEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            +++E  V V+TG+S G+G+++A        KV+VNY     EA  V +E I+  GG+A+   GDV+ E+DV +++++A+  +G +D++IN
Sbjct:    3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMIN 92          
BLAST of FC920582 vs. ExPASy Swiss-Prot
Match: FABG_PERAE (3-oxoacyl-[acyl-carrier-protein] reductase (Fragments) OS=Persea americana PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 45/97 (46.39%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  333 EQATNEAVQNVEAPVAVVTGASRGIGRAVATSLGKAGCKVLVNYARSSKEAEEVCKEIEASGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILIN 623
            EQ + E  Q+VEAPV ++TGAS                                  EIEAS  QAL+FG DV KEADVE+MIK AVDAWG VD+LIN
Sbjct:    3 EQVSIEVPQSVEAPVVIITGAS----------------------------------EIEASTIQALSFGPDVXKEADVEAMIK-AVDAWGQVDVLIN 64          
The following BLAST results are available for this feature:
BLAST of FC920582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHK2_STRVN8.767e-1245.35Granaticin polyketide synthase putative ketoacyl r... [more]
VER1_ASPPA1.953e-1141.18Versicolorin reductase OS=Aspergillus parasiticus ... [more]
DHGB_BACME2.551e-1136.67Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
FABG_PERAE7.422e-1146.393-oxoacyl-[acyl-carrier-protein] reductase (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC32010C08EF RVDevelop1 Citrus clementina cDNA clone C32010C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920582 ID=FC920582; Name=FC920582; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTGGTTGGCTTGTATAAAAGGGAGCGAGCAAGGAAGC
GTCTCTCGAAGCCATTACCACAAAACTTCATTTCTGGCTACCCTCTTGTC
TTGGATTATTTCGTTTCGCGGAAAACCTCTCATGGCTGCCGTCGCCGGAT
CCAACATTGTCGCGTTCAAATCGGCGGCTACTTCCGCGAAATTCGGTGAC
CGAAAAATCCCGCAGTTTCGTCAATGGTCTCCTGTTCAGGTTAAGGCTCT
GCCTCGCCCTTCCGTTGAGCTCAAGAGTAGATGGAACAGCTCCTTCCCTT
CTTCTGGAATCAGAGCTCAGGTTGCCACCATAGAACAAGCAACCAATGAA
GCAGTACAAAATGTGGAAGCTCCTGTGGCTGTGGTGACTGGTGCCTCTAG
GGGTATTGGCAGAGCAGTAGCGACGTCCTTGGGAAAAGCAGGTTGCAAGG
TCCTGGTAAATTATGCTAGGTCATCAAAGGAAGCCGAAGAAGTTTGCAAA
GAGATTGAGGCATCTGGCGGTCAGGCTCTTACTTTTGGTGGAGATGTTTC
CAAAGAAGCTGATGTGGAATCAATGATCAAAACTGCTGTCGATGCTTGGG
GAACTGTTGATATATTGATTAACATGCANGAATCACTAGAGATACATTGC
TCAT
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