FC920588

Overview
NameFC920588
Unique NameFC920588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14170 contig Ccv1_Contig14170:3..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GRIP4_ARATH (GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 64/223 (28.70%), Postives = 95/223 (42.60%), Query Frame = 2
Query:   38 FSSQIFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYL---HNKDNATYGVNFAVGGATAVNHAF-FVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAY------TLGSSVTSDTIRKLAIPSFTNFLQALLK 676
            F+S I ++F+   SL     +    L       ++AFGDS  + GN       S F   +  PYG T F  PT R SDGR++IDF+ +   LP +PP L   ++    TYG+NFA   A      F     NLS D+  Q         N F   +    +     + +     A++ +  IG NDY Y      +  S+ T +      I + T  ++ L K
Sbjct:    6 FNSIIIILFICTISLSIVSISCKEDLKTNQA-ALFAFGDSLFEAGNNNYFDSISSF-RSNFWPYGKTTFKFPTGRVSDGRIMIDFIAEYAWLPLIPPNLQPGYSNSQLTYGLNFATTAAGVFAGTFPGSVTNLSKDLGTQ--------LNNFKNVEKTLRSNLGDAEARRVISKAVY-LFHIGANDYQYPFFANTSTFSNTTKERFIDFVIGNTTTVIEELYK 217          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GDL61_ARATH (GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 64/196 (32.65%), Postives = 89/196 (45.41%), Query Frame = 2
Query:  128 FNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHN-KDNATYGVNFAVGGATAV--NHAFFVKNNLSLDITPQSIQTQLIWFNKF---------LESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKLAIPSFTNFLQALLKE 679
            F  I+ FGDS +DTG    A          + P+G TYF  P  R SDGRL+IDF+ +SL +PFL PYL +   +  +G NFA   +T +  N + FV       I+P S+  QL    +F         L+  G K   S     +  F  +L+    IG ND+   L S        KL +P     +   +KE
Sbjct:   32 FEAIFNFGDSNSDTGGFWAAFP------AQSGPWGMTYFKKPAGRASDGRLIIDFLAKSLGMPFLSPYLQSIGSDFRHGANFATLASTVLLPNTSLFVSG-----ISPFSLAIQLNQMKQFKVNVDESHSLDRPGLKILPS-----KIVFGKSLY-TFYIGQNDFTSNLASIGVERV--KLYLPQVIGQIAGTIKE 208          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GDL54_ARATH (GDSL esterase/lipase At3g27950 OS=Arabidopsis thaliana GN=At3g27950 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 66/218 (30.28%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   50 IFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKD-NATYGVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAA----FDDALFWVGEIGVNDYAYTLGSSVTSDTIR---KLAIPSFTNFLQALLKE 679
            I ++ +      SAL+++ N      F  ++ FGDS +DTG    A G          P G  +F     R+SDGRL+IDF+T++L+LP+L PYL +   N  +G NFA GG+        ++  L+   +P  + TQ+  F  F         +++G   + +    F  AL+ + +IG ND A     ++T + ++    L I +FT  L+ L KE
Sbjct:   10 IIVLLLGFTEKLSALSSSCN------FPAVFNFGDSNSDTGAISAAIGEV------PPPNGVAFFGRSAGRHSDGRLIIDFITENLTLPYLTPYLDSVGANYRHGANFATGGSC-------IRPTLAC-FSPFHLGTQVSQFIHFKTRTLSLYNQTNGKFNRLSHTNYFSKALYTL-DIGQNDLAIGF-QNMTEEQLKATIPLIIENFTIALKLLYKE 205          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GDL60_ARATH (GDSL esterase/lipase At3g62280 OS=Arabidopsis thaliana GN=At3g62280 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 49/127 (38.58%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   29 FGVFSSQIFLMFVLLPSLFSALTAATNTLTPRPFNK---IYAFGDSFTDTGNTKTATG-PSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHN-KDNATYGVNFAVGGATAV 394
            + V S Q F + + L     +L   +N+ T    NK   +  FGDS +DTG      G P G       P+G T+FH  T R  DGRL++DF  + L + +L PYL +   N   GVNFAV GATA+
Sbjct:    3 YTVSSLQCFFLVLCL-----SLLVCSNSETSYKSNKKPILINFGDSNSDTGGVLAGVGLPIGL------PHGITFFHRGTGRLGDGRLIVDFYCEHLKMTYLSPYLDSLSPNFKRGVNFAVSGATAL 118          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GDL2_ARATH (GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 58/187 (31.02%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  137 IYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKDNATY--GVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQ-----CQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKLAIPSFTNFLQALLK 676
            I+ FGDS +DTG        +G G+    P G ++F   T R SDGRLVIDF+ QSL+   L PYL +   + +  G NFA+ G++ +               P ++  QL+ F  F +S+  + A  S P       ++ F +AL+ + +IG ND A +    ++   + KL IP+  + +++ +K
Sbjct:   38 IFNFGDSNSDTGGLV-----AGLGYSIGLPNGRSFFQRSTGRLSDGRLVIDFLCQSLNTSLLNPYLDSLVGSKFQNGANFAIVGSSTLPR-----------YVPFALNIQLMQFLHF-KSRALELASISDPLKEMMIGESGFRNALYMI-DIGQNDIADSFSKGLSYSRVVKL-IPNVISEIKSAIK 205          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 75/233 (32.19%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   17 MATSFGVFSSQIFLMFVLLPSLFSALTAATN---TLTPRPFNKIYAFGDSFTDTGNTKTATG-PSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYLHNKDNATY--GVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQ-----CQAAFDDALFWVGEIGVNDYA--YTLGSSVTSDTIRKLAIPSFTNFLQALLK 676
            MAT F ++S+     F+ L SL   +    +   + T RP   I+ FGDS +DTG      G P GF      P G  +F   T R SDGRL+IDF+ QSL+   L PYL +     +  G NFA+ G+  +      KN       P S+  Q+  F+ F +S+  + A SS            F +AL+ + +IG ND A  +  G+S  S T++   IP     +++ +K
Sbjct:    1 MATLF-LYSNTFSFFFITLVSLALLILRQPSRAASCTARPV--IFNFGDSNSDTGGLVAGLGYPIGF------PNGRLFFRRSTGRLSDGRLLIDFLCQSLNTSLLRPYLDSLGRTRFQNGANFAIAGSPTL-----PKN------VPFSLNIQVKQFSHF-KSRSLELASSSNSLKGMFISNNGFKNALYMI-DIGQNDIARSFARGNSY-SQTVK--LIPQIITEIKSSIK 208          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GLIP2_ARATH (GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=GLIP2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  137 IYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYL---HNKDNATYGVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAY--TLGSSVTSDTIRKLAIPSFTNFLQALLKE 679
            ++ FGDS  D GN         F   +  PYG T F  PT R SDGR + DF+ +   LP +P YL   + K+   YGV+FA  GA A+   F           P  +       N F + +    +     Q +     A++ +  IGVNDY Y  +  SS+   + +++ +        A++KE
Sbjct:   40 LFVFGDSVFDAGNNNYIDTLPSF-RSNYWPYGQTTFKFPTGRVSDGRTIPDFIAEYAWLPLIPAYLQPSNGKNQFPYGVSFASAGAGALVGTF-----------PGMVINLKSQLNNFKKVEKLLRSTLGEAQGKMVISRAVY-LFHIGVNDYQYPFSTNSSIFQSSPQEIYVDFVVGNTTAVIKE 212          
BLAST of FC920588 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 62/207 (29.95%), Postives = 92/207 (44.44%), Query Frame = 2
Query:   50 IFLMFVLLPSLFSALTAATNTLTPRPFNKIYAFGDSFTDTGNTKTATGPSGFGHVSTSPYGSTYFHHPTNRYSDGRLVIDFVTQSLSLPFLPPYL---HNKDNATYGVNFAVGGATAVNHAFFVKNNLSLDITPQSIQTQLIWFNKFLESKGCKEAESSGPQCQAAFDDALFWVGEIGVNDYAYTLGSSVTSDTIRKLAIPSFTNFL 661
            IF ++ ++ S+ S      N L       ++ FGDS  D GN       S F   +  PYG T F  PT R SDG        +   LP +PP L   +  +  TYGV+FA  GA A+  +F     L + I   ++ TQL   N F + +    +E    + +  F  A++ +  IG NDY Y    S  S T +  +   F +F+
Sbjct:    8 IFFVYTIILSIGSINCIDNNNLVTNQA-ALFVFGDSLFDAGNNNYINTVSSF-RSNIWPYGQTNFKFPTGRLSDG-------PEKAWLPSIPPNLQPNNGNNQFTYGVSFASAGAGALAESF-----LGMVI---NLGTQL---NNFKDVEKSLRSELGDAETKRVFSRAVY-LFHIGANDYFYPF--SANSSTFKSNSKEKFVDFV 191          
The following BLAST results are available for this feature:
BLAST of FC920588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRIP4_ARATH1.849e-1328.70GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=... [more]
GDL61_ARATH5.379e-1332.65GDSL esterase/lipase At4g01130 OS=Arabidopsis thal... [more]
GDL54_ARATH5.379e-1330.28GDSL esterase/lipase At3g27950 OS=Arabidopsis thal... [more]
GDL60_ARATH1.565e-1238.58GDSL esterase/lipase At3g62280 OS=Arabidopsis thal... [more]
GDL2_ARATH2.044e-1231.02GDSL esterase/lipase At1g09390 OS=Arabidopsis thal... [more]
LIP4_ARATH2.669e-1232.19GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GLIP2_ARATH2.260e-1129.03GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=... [more]
GLIP3_ARATH6.575e-1129.95GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32010D05EF RVDevelop1 Citrus clementina cDNA clone C32010D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920588 ID=FC920588; Name=FC920588; organism=Citrus clementina; type=EST; length=708bp
GAGGCTTAGTGAGACAATGGCTACTTCCTTCGGAGTTTTTTCCTCCCAAA
TTTTCCTCATGTTCGTACTCTTACCCTCCCTGTTTTCTGCCCTTACCGCT
GCAACCAACACATTAACCCCACGTCCATTTAATAAGATCTATGCCTTCGG
TGACTCATTCACCGACACTGGTAACACCAAGACTGCGACTGGCCCTAGTG
GCTTTGGCCATGTCTCCACCTCTCCATACGGCAGCACATATTTCCACCAC
CCCACCAACCGATACTCCGATGGACGGCTGGTGATTGACTTTGTAACTCA
ATCCCTGTCACTACCATTCTTGCCACCTTACCTTCACAACAAAGATAATG
CAACATATGGTGTCAACTTTGCTGTTGGCGGTGCCACTGCTGTAAATCAT
GCTTTCTTTGTCAAAAACAATCTCAGTCTTGACATTACTCCTCAGTCAAT
CCAAACTCAGCTCATTTGGTTCAACAAGTTCTTGGAGAGCAAGGGATGTA
AAGAAGCAGAGTCCTCAGGGCCTCAGTGCCAGGCAGCTTTCGATGATGCA
TTGTTCTGGGTTGGTGAAATTGGAGTCAACGATTATGCGTACACTCTAGG
ATCTTCTGTTACAAGTGACACTATCCGAAAACTCGCTATCCCTAGTTTTA
CAAATTTTCTGCAGGCGTTGCTTAAAGAGGAGCAAAATATGTTGTTGTTC
AAGGTCTG
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