FC920596

Overview
NameFC920596
Unique NameFC920596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11915 contig Ccv1_Contig11915:840..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.259e-29
Identity = 74/203 (36.45%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   79 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDV---------RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            EED Y  +LPLAH+ +   E  C+  GC IG+              +    D   LKPT+ + VP + DRIY  + NK++   A  + LF  AYNYK+  + KG     + PL D  VF  +R   GG ++ +L G APL    + F+ +    P+ QGYGLTES  +G  T + D +N  G VG P+   E +L++  E GY
Sbjct:  320 EEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGC----STPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD-YN-TGRVGAPLVCCEIKLKNWEEGGY 516          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 75/202 (37.13%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   82 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQ----GDVRYLME-----DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +DTY  +LPLAH+ +   E  C   GC IG+       D    ++     D   LKPT+ + VP + DRIY  + +K+     + K LF+  Y+YKL  +KKG      APL + ++F K++   GG ++ MLSG APL      F+ V    P+ QGYGLTESC +G  T + D     G VG P+   E +L+   E GY
Sbjct:  271 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYD----APLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDY--TTGRVGAPLICCEIKLKDWQEGGY 466          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 74/203 (36.45%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   79 EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDV---------RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            EED Y  +LPLAH+ +   E  C+  GC IG+              +    D   LKPT+ + VP + DRIY  + NK++   A  + LF  AYNYK+  + KG     + PL D  VF  +R   GG ++ +L G APL    + F+ +    P+ QGYGLTES  +G  T + D +N  G VG P+   E +L++  E GY
Sbjct:  320 EEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGC----STPLCDRFVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD-YN-TGRVGAPLVCCEIKLKNWEEGGY 516          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   82 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQ----GDVRYLME-----DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +DTY  +LPLAH+ +   E  C   GC IG+       D    ++     D   LKPT+ + VP + DRIY  + +K+     + K LF+  Y+YKL  +KKG      APL + ++F K+++  GG ++ ML G APL      F+ V    P+ QGYGLTESC +G  T + D     G VG P+   E +L+   E GY
Sbjct:  312 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKKGYD----APLCNLILFKKVKDLVGGNVRMMLYGGAPLSPQTHRFMNVCLCCPIGQGYGLTESCGAGTVTEVTDY--TTGRVGAPLICCEIKLKDWQEGGY 507          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.374e-28
Identity = 79/224 (35.27%), Postives = 127/224 (56.70%), Query Frame = 1
Query:    1 VLTNQAIVAEVLS----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +LT+Q IV+ + +    ++ +F  T      ED   S+LPLAH+++++++      G  IGF+QGD+R L +D++ LKPT+F  VPR+ +R+Y  + N+  +   L K L   A   K   ++ G+ +  +  L D LVFSKI+ + GG+++ M++GAAP+   V  F R   G  + + YG TE  +GC  TS  D     G VG P++    +LE V +M Y
Sbjct:  272 MLTHQNIVSNMAAFLKFLEPIFQPT-----PEDVTISYLPLAHMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT--PLKKFLLNLAIISKFNEVRNGIIRRNS--LWDKLVFSKIQSSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDW--TAGHVGTPVSCNFVKLEDVADMNY 484          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.178e-27
Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 1
Query:   76 SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            + +D   S+LPLAH+++++++      G  IGF+QGD+R L +D++ LKPT+F  VPR+ +R+Y  + N+  +   L K L   A   K   +K G+ +  +  L D LVFSKI+ + GG+++ M++GAAP+   V  F R   G  + + YG TE   GC  TS  D     G VG P+     +LE V +M Y
Sbjct:  296 TSDDVTISYLPLAHMFERLVQGILFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT--PLKKFLLNLAIISKFNEVKNGIIRRDS--LWDKLVFSKIQGSLGGKVRLMITGAAPISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDW--TAGHVGTPVACNFVKLEDVADMNY 484          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.539e-27
Identity = 77/222 (34.68%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +LT+  +VA+         VT KV    ++D   SFLPLAH+++++I++     G  +GF+QGD+R L +D++ L+PT+F  VPR+ +R+Y  I ++  +  +L + L EFA   K   ++ G+ +N +  + D L F+KI+ + GG ++ +++GAAP    V  FLR   G  + +GYG TE  +GC FT+  D  +  G VG P+     +L    E+ Y
Sbjct:  287 MLTHGNVVADFSG---FLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIFHQADT--SLKRWLLEFAAKRKQAEVRSGIIRNNS--IWDELFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS--GHVGAPLPCNHIKLVDAEELNY 499          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27
Identity = 68/192 (35.42%), Postives = 116/192 (60.42%), Query Frame = 1
Query:   85 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            D +FS+LPLAH++++++++     G  +GF+QGD+R L +D++ L+PT+F  VPR+ +R+Y  I ++  +  +L + L EFA   K   ++ G+ +N +  + D L F+KI+ + GG ++ +++GAAP    V  FLR   G  + +GYG TE  +GC FT+  D  +  G VG P+     +L    E+ Y
Sbjct:  314 DVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIFHQADT--SLKRWLLEFAAKRKQAEVRSGIIRNNS--IWDELFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS--GHVGAPLPCNHIKLVDAEELNY 499          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 78/222 (35.14%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVESRLESVPEMGY 657
            +LT+  +VA+         VT KV    ++D   SFLPLAH+++++I++     G  +GF+QGD+R L +D++ L PT+F  VPR+ +R+Y  I ++ ++   L + L EFA   K   ++ G+ +N +  + D L F+KI+ + GG ++ +++GAAP    V  FLR   G  + +GYG TE  +GC FT+  D  +  G VG P+     +L  V E+ Y
Sbjct:  287 MLTHGNVVADFSG---FLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALCPTIFPVVPRLLNRMYDKIFSQANT--PLKRWLLEFAAKRKQAEVRSGIIRNDS--IWDELFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGDWTS--GHVGAPLPCNHIKLVDVEELNY 499          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF2_SCHPO (Long-chain-fatty-acid--CoA ligase 2 OS=Schizosaccharomyces pombe GN=SPBP4H10.11c PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 73/226 (32.30%), Postives = 129/226 (57.08%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF------WQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPMTTVESRLESVPEMGY 657
            VL ++ I+A +  +++   +  +  + +D   ++LPLAHI++ I E  C++ G  +G+          V     D+ E +PT+  GVP VY+ I  GI  K+SS  A  +K+F  + + K   +++ +P + A   LD++VF+K++ A GGRL+  +SG A L    + FL  +   P+  GYGLTE+C+G F    + +++   TVG P+ ++E +L  +P++GY
Sbjct:  264 VLLHRNIIAALGGINR---ILSQHINVKDYVLAYLPLAHIFEFIFEMCCLYWGGVLGYASPRTLTDASVVNCKGDLTEFRPTVLIGVPAVYELIKKGILAKVSSMPAHRQKVFSGSLSLKQYLIERNLPGSAA---LDAIVFNKVKAATGGRLRYCISGGAALAASTQAFLS-SCICPVLPGYGLTETCAGSFVLSPEQWHLYANTVGFPIPSIEFKLVDIPDLGY 482          
The following BLAST results are available for this feature:
BLAST of FC920596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ACSL3_RAT1.259e-2936.45Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL4_RAT1.644e-2937.13Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL3_MOUSE1.644e-2936.45Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]
ACSL4_MOUSE6.247e-2936.63Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL5_RAT2.374e-2835.27Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL5_MOUSE1.178e-2736.92Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL6_MOUSE1.539e-2734.68Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL6_RAT3.428e-2735.42Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL6_HUMAN7.637e-2735.14Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
LCF2_SCHPO3.790e-2632.30Long-chain-fatty-acid--CoA ligase 2 OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionC32010E05EF RVDevelop1 Citrus clementina cDNA clone C32010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920596 ID=FC920596; Name=FC920596; organism=Citrus clementina; type=EST; length=668bp
GTGCTCACTAATCAGGCTATTGTAGCAGAAGTACTGAGTGTCGACCAAAT
GTTTGTGGTTACGGGCAAAGTGTGTTCAGAAGAGGATACATACTTCTCAT
TCCTTCCTTTGGCCCATATATATGATCAGATCATTGAAACTCATTGCATC
CACAAGGGTTGTTCAATAGGATTTTGGCAAGGCGATGTTCGGTATTTGAT
GGAGGACATCCAGGAACTGAAACCAACAATGTTTTCTGGGGTCCCTAGAG
TGTATGACCGTATATACACTGGAATATCCAATAAAATATCATCTGGAGGC
GCACTGTCAAAGAAATTGTTTGAATTTGCTTATAACTACAAGTTGGGAAA
TATGAAGAAGGGCATGCCACAAAACAAAGCAGCACCTCTCTTAGACAGTC
TCGTATTCAGTAAGATAAGGGAAGCTTTTGGAGGAAGACTCCAAGCCATG
TTATCTGGCGCAGCACCTTTGCCTATTCATGTGGAGGAGTTCCTACGGGT
CACTAGTGGTGCTCCTTTGACACAAGGATATGGTCTTACGGAAAGTTGTA
GTGGGTGTTTTACATCCCTAGCCGATGTATTTAATATGATTGGAACTGTT
GGTGTCCCTATGACAACTGTTGAAAGCAGGCTTGAGTCCGTGCCAGAGAT
GGGATACGATGCCCTTTC
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