FC920596

Overview
NameFC920596
Unique NameFC920596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF1_YEAST (Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyces cerevisiae GN=FAA1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   67 KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF------WQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPMTTVESRLESVPEMGYDA 663
            K     D    FLPLAHI++ + E    + G  IG+          VR    D+QE KPT+  GV  V++ +  GI N+I +   L+KK+F  AYN KL   +  +P   A   L +LVF KIR A GG+L+ +L+G +P+    +EF+      P+  GYGLTE+C+   T++ D  N  +G  G     V  +L  V E+GY A
Sbjct:  300 KFVGNTDRVICFLPLAHIFELVFELLSFYWGACIGYATVKTLTSSSVRNCQGDLQEFKPTIMVGVAAVWETVRKGILNQIDNLPFLTKKIFWTAYNTKLNMQRLHIPGGGA---LGNLVFKKIRTATGGQLRYLLNGGSPISRDAQEFI-TNLICPMLIGYGLTETCAS--TTILDPANFELGVAGDLTGCVTVKLVDVEELGYFA 499          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF1_SCHPO (Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe GN=lcf1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 64/205 (31.22%), Postives = 105/205 (51.22%), Query Frame = 1
Query:   76 SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLME--------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIRE-AFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            + +D   ++LPLAHI +   E  C+  G +IG+   +VR L++        DI   +PT+  GVP V++ +  GI +K+++  A+ + +F  AY  K   M+  +P    + +LD+ VF+KIR    GGRL+  LSG + L    + FL +    P+  GYGLTE  +         FN+  + G  +   E +L    E  Y++
Sbjct:  279 TSKDYLLAYLPLAHILEFAFENICLAWGGTIGY--ANVRTLVDTNCRNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTKAKLMRHNLP---GSCVLDTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-CPMLIGYGLTEISAAAMVQNPACFNLDDSAGSLLPCTEMKLVDCEEGNYNS 477          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF3_YEAST (Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyces cerevisiae GN=FAA3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.480e-18
Identity = 72/229 (31.44%), Postives = 115/229 (50.22%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLME--------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            VLT+  IV+ +  V     V G + S  D   SFLPLAHI++ + E    +    +G+  G V+ L          D+ E KPT+  GV  V++ +   I  KIS    + +K+F  AY+ K    +K +P       L  +VF K+R+A GG L+ +++G + + I  ++F  +    P+  GYGLTE+ +       D F   G VG  + +V ++L  V ++GY A
Sbjct:  281 VLTHYNIVSGIAGVGHN--VFGWIGST-DRVLSFLPLAHIFELVFEFEAFYWNGILGY--GSVKTLTNTSTRNCKGDLVEFKPTIMIGVAAVWETVRKAILEKISDLTPVLQKIFWSAYSMK----EKSVP---CTGFLSRMVFKKVRQATGGHLKYIMNGGSAISIDAQKFFSIVL-CPMIIGYGLTETVANACVLEPDHFE-YGIVGDLVGSVTAKLVDVKDLGYYA 495          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF4_YEAST (Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyces cerevisiae GN=FAA4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 70/227 (30.84%), Postives = 107/227 (47.14%), Query Frame = 1
Query:    1 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQ------GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDA 663
            VLT+  IVA +  V     V G +    D   +FLPLAHI++   E    +    +G+           R    D+ E KPT+  GV  V++ +  GI  KI+     S+ LF   Y  K  N+         + LL  L+F +IREA GG L+ +L+G + + I  ++FL      P+  GYGLTE  +       + F+  G  G  + T+ ++L  V ++GY A
Sbjct:  281 VLTHYNIVAGIGGVGHN--VIGWI-GPTDRIIAFLPLAHIFELTFEFEAFYWNGILGYANVKTLTPTSTRNCQGDLMEFKPTVMVGVAAVWETVRKGILAKINELPGWSQTLFWTVYALKERNIP-------CSGLLSGLIFKRIREATGGNLRFILNGGSAISIDAQKFLS-NLLCPMLIGYGLTEGVANACVLEPEHFD-YGIAGDLVGTITAKLVDVEDLGYFA 495          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCFH_HAEIN (Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae GN=HI0002 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 1
Query:   76 SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN-----YKLGNMKKGMP--QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS--GCFTSLADVFNMIGTV 600
            +++D   SFLP +HI+++    + +H+G  + + + D   +   + E++PT+   VPR Y++IY  + +K+     L + +F +A +     + L    K +P    K   L D LV SK+R+  GGR++ M  G A L   +  F     G  +  GYG+TE+ +   C+       N IGT+
Sbjct:  224 TDQDISLSFLPFSHIFERAWAAYILHRGAILCYLE-DTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFHWAISVGQKYFDLRANNKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFHAI-GINIKLGYGMTETTATVSCWHDFQFNPNSIGTL 405          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ORA_PLAFN (Octapeptide-repeat antigen (Fragment) OS=Plasmodium falciparum (isolate NF7 / Ghana) PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 54/185 (29.19%), Postives = 89/185 (48.11%), Query Frame = 1
Query:   88 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWQGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN--MIGTVGVPMTTVESR 630
            T+ S+LP++HIY+++I    +  G  I  W  D+++L  DI   K  +  GVP+V++R+Y  I  KI++     K + + A      N++KG      + +++ +  +  KI++     +  +L+G   L   V E L V       QGYGLTES    F    D  N   +G    P T  + R
Sbjct:  243 THLSYLPVSHIYERVIFFIALFLGVKINIWSRDIKFLNTDICNSKAEIILGVPKVFNRMYATIMTKINNLSRCKKWIAKQAI-----NLRKGKNNGNFSKVVEGITNISRKIKDKINPNMDVILNGGGKLSPEVAEGLSVLLNVKYYQGYGLTESTGPIFLQDVDDCNTESMGVAVSPSTRYKVR 422          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: LCF2_YEAST (Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae GN=FAA2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 61/193 (31.61%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  100 FLPLAHIYDQIIETHCIHKGCSIGFW-QGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL--DSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVPMTTVESRLESVPEMGYDA 663
            FLPLAHI+++++  + +  G  IGF  + D   L+ED++ LKP   + VPR+  R   GI N +               +       +G P       L    ++  KIR++ G      +++G+AP+      FLR      + QGYGLTE+ +G    L++ F   +G+ G    + E RL+SVPEMGY A
Sbjct:  344 FLPLAHIFERMVIAYDLAIGFGIGFLHKPDPTVLVEDLKILKPYAVALVPRILTRFEAGIKNALDKSTVQRNVANTILDSKSARFTARGGPDKSIMNFLVYHRVLIDKIRDSLGLSNNSFIITGSAPISKDTLLFLRSALDIGIRQGYGLTETFAG--VCLSEPFEKDVGSCGAIGISAECRLKSVPEMGYHA 534          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACBG2_RAT (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Rattus norvegicus GN=Acsbg2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 61/175 (34.86%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   70 VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWQGDVRY--LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA------YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT 564
            V  ++DT  S+LPL+HI  Q+++    I  G    F Q D     L+  +QE+KPT F GVPRV++++   I   ++    L KK F +A       N K    K+ +P N    +  +LVF+K+R + G        SGA+PL   V EF  ++   P+ + YG+TE CSG  T
Sbjct:  260 VSGKQDTIVSYLPLSHIAAQLMDIWIPIKVGVLTFFAQPDALRGTLVYTLQEVKPTYFLGVPRVWEKMQDTIKENVAKSSNLRKKAFAWAKMLGLKVNTKKMLGKRDIPMNYR--MAKALVFTKVRTSLGLDNCHTFFSGASPLSQDVSEFF-LSLDIPIGEIYGMTE-CSGPHT 430          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACBG2_MOUSE (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Mus musculus GN=Acsbg2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 1
Query:   67 KVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWQGDVRY--LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA------YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT 564
            +V  +++T  S+LPL+HI  Q+ +    I  G    F Q D     L+  +QE+KPT+F GVPR+++++   I   ++    L KK F +A       N K    K+ +P N    +  +LVF+K+R + G     A  S A+PL   V EF  ++   P+ + YG++E CSG  T
Sbjct:  259 RVSGKQNTIVSYLPLSHIAAQLTDIWIPIKIGALTFFAQPDALRGTLVYTLQEVKPTLFMGVPRIWEKMQDTIKENVARSSRLRKKAFAWAKMLGLKVNTKRMLGKRDIPMNYR--MAKALVFAKVRTSLGLDNCHAFFSSASPLSQDVSEFF-LSLDIPIGEIYGMSE-CSGPHT 430          
BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: ACBG2_HUMAN (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo sapiens GN=ACSBG2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   67 KVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWQGDVRY--LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP----LLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 546
            K+  + +T  S+LPL+HI  Q+++    I  G    F Q D     L+  ++E+KPT+F GVP+++++I+  +    +    L KK F +A N       K M      P    +  +LVFSK++ + G     + +SG APL     EF  ++   P+ + YGL+ES
Sbjct:  259 KLTDKHETVVSYLPLSHIAAQMMDIWVPIKIGALTYFAQADALKGTLVSTLKEVKPTVFIGVPQIWEKIHEMVKKNSAKSMGLKKKAFVWARNIGFKVNSKKMLGKYNTPVSYRMAKTLVFSKVKTSLGLDHCHSFISGTAPLNQETAEFF-LSLDIPIGELYGLSES 425          
The following BLAST results are available for this feature:
BLAST of FC920596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LCF1_YEAST2.716e-2436.41Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyc... [more]
LCF1_SCHPO4.487e-1931.22Long-chain-fatty-acid--CoA ligase 1 OS=Schizosacch... [more]
LCF3_YEAST6.480e-1831.44Long-chain-fatty-acid--CoA ligase 3 OS=Saccharomyc... [more]
LCF4_YEAST3.556e-1630.84Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyc... [more]
LCFH_HAEIN4.644e-1628.80Putative long-chain-fatty-acid--CoA ligase OS=Haem... [more]
ORA_PLAFN1.351e-1529.19Octapeptide-repeat antigen (Fragment) OS=Plasmodiu... [more]
LCF2_YEAST2.305e-1531.61Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyc... [more]
ACBG2_RAT3.328e-1434.86Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Rattus... [more]
ACBG2_MOUSE2.817e-1332.95Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Mus mu... [more]
ACBG2_HUMAN4.068e-1230.95Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC32010E05EF RVDevelop1 Citrus clementina cDNA clone C32010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920596 ID=FC920596; Name=FC920596; organism=Citrus clementina; type=EST; length=668bp
GTGCTCACTAATCAGGCTATTGTAGCAGAAGTACTGAGTGTCGACCAAAT
GTTTGTGGTTACGGGCAAAGTGTGTTCAGAAGAGGATACATACTTCTCAT
TCCTTCCTTTGGCCCATATATATGATCAGATCATTGAAACTCATTGCATC
CACAAGGGTTGTTCAATAGGATTTTGGCAAGGCGATGTTCGGTATTTGAT
GGAGGACATCCAGGAACTGAAACCAACAATGTTTTCTGGGGTCCCTAGAG
TGTATGACCGTATATACACTGGAATATCCAATAAAATATCATCTGGAGGC
GCACTGTCAAAGAAATTGTTTGAATTTGCTTATAACTACAAGTTGGGAAA
TATGAAGAAGGGCATGCCACAAAACAAAGCAGCACCTCTCTTAGACAGTC
TCGTATTCAGTAAGATAAGGGAAGCTTTTGGAGGAAGACTCCAAGCCATG
TTATCTGGCGCAGCACCTTTGCCTATTCATGTGGAGGAGTTCCTACGGGT
CACTAGTGGTGCTCCTTTGACACAAGGATATGGTCTTACGGAAAGTTGTA
GTGGGTGTTTTACATCCCTAGCCGATGTATTTAATATGATTGGAACTGTT
GGTGTCCCTATGACAACTGTTGAAAGCAGGCTTGAGTCCGTGCCAGAGAT
GGGATACGATGCCCTTTC
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