FC920596

Overview
NameFC920596
Unique NameFC920596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11915 contig Ccv1_Contig11915:840..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920596 vs. ExPASy Swiss-Prot
Match: BGM_DROME (Very long-chain-fatty-acid--CoA ligase bubblegum OS=Drosophila melanogaster GN=bgm PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 51/201 (25.37%), Postives = 97/201 (48.26%), Query Frame = 1 
Query:   85 DTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWQGDVRY--LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA---PLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVESRLESVPEMGYDAL 666
            ++  S+LPL+H+  Q ++ + C      I F   D     L++ +Q+ +PT F GVPRVY++    +    SS G+L K L  +A    L +      ++       +  SL+ SK+++A G  R+  + S AAP+    +++  ++    +   +G++E+ +GC T        + T+G  +   ES+  +    G+  L
Sbjct:  265 ESIVSYLPLSHVAAQTVDIYTCAFVAGCIWFADKDALKGTLVKSLQDARPTRFMGVPRVYEKFQERMVAVASSSGSLKKMLASWAKGITLKHYMVSQGKSSGGFRYKIAKSLIMSKVKQALGFDRVLTLASAAAPMSPETKKYF-LSLDLKIVDAFGMSET-AGCHTICLPDSVGLNTIGKTLPGCESKFINKDANGHGEL 463
The following BLAST results are available for this feature:
BLAST of FC920596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
BGM_DROME7.672e-1125.37Very long-chain-fatty-acid--CoA ligase bubblegum O... [more]

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Properties
Property NameValue
Genbank descriptionC32010E05EF RVDevelop1 Citrus clementina cDNA clone C32010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920596 ID=FC920596; Name=FC920596; organism=Citrus clementina; type=EST; length=668bp
GTGCTCACTAATCAGGCTATTGTAGCAGAAGTACTGAGTGTCGACCAAAT
GTTTGTGGTTACGGGCAAAGTGTGTTCAGAAGAGGATACATACTTCTCAT
TCCTTCCTTTGGCCCATATATATGATCAGATCATTGAAACTCATTGCATC
CACAAGGGTTGTTCAATAGGATTTTGGCAAGGCGATGTTCGGTATTTGAT
GGAGGACATCCAGGAACTGAAACCAACAATGTTTTCTGGGGTCCCTAGAG
TGTATGACCGTATATACACTGGAATATCCAATAAAATATCATCTGGAGGC
GCACTGTCAAAGAAATTGTTTGAATTTGCTTATAACTACAAGTTGGGAAA
TATGAAGAAGGGCATGCCACAAAACAAAGCAGCACCTCTCTTAGACAGTC
TCGTATTCAGTAAGATAAGGGAAGCTTTTGGAGGAAGACTCCAAGCCATG
TTATCTGGCGCAGCACCTTTGCCTATTCATGTGGAGGAGTTCCTACGGGT
CACTAGTGGTGCTCCTTTGACACAAGGATATGGTCTTACGGAAAGTTGTA
GTGGGTGTTTTACATCCCTAGCCGATGTATTTAATATGATTGGAACTGTT
GGTGTCCCTATGACAACTGTTGAAAGCAGGCTTGAGTCCGTGCCAGAGAT
GGGATACGATGCCCTTTC
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