FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 56/127 (44.09%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +D  ++RK    V+K+ST     + +   V+PD + PG  V +N+ +  +++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   73 GTVLDRVNERKA---VVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 56/159 (35.22%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  268 LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +P L+G ++E+++ N                       ++++++  T+ + ++  +D + LKP   V + + S  ++DTLP E DS +  +  DEKP+E Y+DIGG + Q QE+ EA+ LP+TH   ++++G+ PP+GVLLYGPPGTGKT     V H+
Sbjct:   70 VPLLIGQLLEMVDSNTG---------------------IVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 207          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 68/205 (33.17%), Postives = 111/205 (54.15%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + +   +D   +KPG  V +N+    IL+ LP + D  VK ME+ E+P   Y++IGGLE+QI+EL E + LP+ + E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSPDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 66/193 (34.20%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  139 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R  R L+ ++R L+ + +R   EL                    P   G ++E+L+   +D A                  +++        + +   ++ DKLKPG  V +++ +  I++ LP+E D  V   EV EKP   Y DIGGLE+Q+ EL EA+ LP+ H E F+K+G+ PPKGVLLYGPPG GKT
Sbjct:   22 RRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQP-------PAFAGTVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKT 186          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 71/219 (32.42%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   97 EDDQLSSMTADDIV----RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            ED+       DD V    R  R L+ ++R+L+ + +R   EL                    P   G+++E+L+   +D A                  +++        + +   +D  KL+PG  V +++ +  I++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKT     + H
Sbjct:    3 EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGSVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAH 193          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 51/112 (45.54%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ ++T    ++ V+ ++D + LKPG  V ++K S  ++D LP E DS ++ +  DEKP   Y DIGGL+ Q QE+ EA+ LP+TH E +Q++G+ PP+GVL+YGPPG GKT
Sbjct:   98 IVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKT 209          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PSMR_SULIM1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_METVS2.584e-2444.09Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6B_DICDI2.584e-2435.2226S protease regulatory subunit 6B homolog OS=Dict... [more]
PSMR_SULSO3.375e-2433.17Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_THEGJ4.408e-2434.20Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRFU4.408e-2432.42Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS6B_CAEEL4.408e-2445.54Probable 26S protease regulatory subunit 6B OS=Cae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
back to top