FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  139 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R  R L+ ++R+L+ + +R   EL                    P   G ++E+L+   +D A                  +++        + +   ++ DKL+PG  V +++ +  I++ LPS  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKT
Sbjct:   24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKT 188          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  271 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            P ++G +V++++ N                      V++++S      +     V+PD +KPG    +N+ S  I++ LPS +D++V  ME+ + P E Y DIGGL++QI E+ EA+ LP+   E F ++G+ PPKGVLLYGPPGTGKT     V H
Sbjct:   99 PLIIGTVVDVVDANR---------------------VIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAH 234          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 49/121 (40.50%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  ++ DEKP   Y+DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:   99 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHH 219          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 51/113 (45.13%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  379 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V++++S      + +   ++ +++KPG    +N+ S  I++ LP+ YD+++  MEV E P+E Y +IGGLEKQI E+ EA+ LP+   E F+K+G+ PPKGVLL+GPPGTGKT
Sbjct:   89 VIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKT 201          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  304 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKT
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  304 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKT
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  304 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKT
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 55/149 (36.91%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  307 MNPEDEA-EEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            + P+DE  EE+ + +D           L+        ++ TS     ++ ++  VD D+L+PG  V +N   + ++  L  + D  V  M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKT
Sbjct:   84 LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 232          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  271 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P LVG + +ILE         DG             VV+K+ST     +     ++ ++LKPG  V +N+ +  I++ LP+  D  V   EV+EKP   Y DIGGL+ QI+E+ EA+ LP+   E F ++G+ PPKGVLLYGPPGTGKT
Sbjct:   62 PLLVGVVSDILE---------DGR------------VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKT 189          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  139 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R  R L+ ++R+L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   +D  KL+PG  V +++ +  +++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKT
Sbjct:   24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---EDRA------------------IVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKT 188          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PSMR_PYRAB5.756e-2434.20Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METB65.756e-2436.94Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6B_MANSE7.518e-2440.5026S protease regulatory subunit 6B OS=Manduca sext... [more]
PSMR_METPE9.819e-2445.13Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS4_RAT9.819e-2437.3326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE9.819e-2437.3326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN9.819e-2437.3326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME9.819e-2436.9126S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_ARCFU1.282e-2341.61Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_PYRHO1.675e-2333.68Proteasome-activating nucleotidase OS=Pyrococcus h... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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