FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:  102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:  102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:  102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.047e-21
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  328 EEDGANIDLDSQRKGKCVVL-KTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +E  +N+ +  ++ GK  VL KT+      + V   V+ D+LK G  V +  DSY +   LP++ D  V  M V++ P   Y  IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:  114 QEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHH 253          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 48/121 (39.67%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ +V  +D + LKP   V ++K S  ++D LP   DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:  102 IVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  442 DKLKPGDL-----VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            DKL P D+     VGV+++ Y I   LP + D+ V  M+V+EKP   Y D+GG ++QI++L E + +P+ H E+F  LG+ PPKGVL+YGPPGTGKT
Sbjct:  122 DKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKT 218          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  421 VVGLVD---PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VV L D   P  ++ G  VGV+++ Y I   LP++ D  V  M+V+EKP   Y+D+GG + QI++L E +  P+ H ER+  LG+ PPKGVLLYGPPGTGKT
Sbjct:  124 VVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKT 225          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS6B_MACFA1.568e-2139.6726S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.568e-2139.6726S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.568e-2139.6726S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS8_ENCCU2.047e-2142.1426S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6B_MOUSE4.561e-2139.6726S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS7_DICDI5.957e-2149.4826S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_CAEEL7.780e-2149.0226S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_XENLA1.016e-2049.4726S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_RAT1.016e-2049.4726S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_PONAB1.016e-2049.4726S protease regulatory subunit 7 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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