FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VGV+++ Y I   LP + D  V  M+V+EKP   Y+D+GG ++QI++L E +  P+ H ERF  LG+ PPKGVLL+GPPGTGKT
Sbjct:  129 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKT 223          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 45/112 (40.18%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ ++T     + ++  +D + LKP   V + + S  ++D LP E DS +  +  DE+P   Y D+GGL+ Q QE+ EA+ LP+T  + ++++G+ PP+GVLLYGPPGTGKT
Sbjct:   71 IVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +D  KL P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:  115 IDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.264e-20
Identity = 44/112 (39.29%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ ++T  +  + ++  +D + LKP   V +++ S  ++D LP + DS +  M  +EKP   Y D+GGL+ Q QE+ EA+ LP+   + ++++G+ PP+GVLLYGPPGTGKT
Sbjct:  109 IVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKT 220          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +D  ++KP   V +  DSY ++  LP++ D  V  M V++ P   Y  +GGLEKQI+E+ E I LP+ H E F+ LG+  PKG+LLYGPPGTGKT     V H+
Sbjct:   99 IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHH 202          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +D  K+ P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:  115 IDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V P  ++ G  VG +++ Y I   LP + D  V  M+V+EKP   Y D+GG ++QI+ L E + LP+   ERF KLG+ PPKG++LYGPPGTGKT
Sbjct:  133 VSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKT 227          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS7_MOUSE1.016e-2049.4726S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA1.016e-2049.4726S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN1.016e-2049.4726S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN1.016e-2049.4726S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS6B_SCHPO1.327e-2040.1826S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS8B_ARATH1.733e-2048.0826S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS6B_YEAST2.264e-2039.2926S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS8_SCHPO2.956e-2046.1526S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8A_ARATH2.956e-2047.1226S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS7_SCHPO2.956e-2048.4226S protease regulatory subunit 7 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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