FC920599

Overview
NameFC920599
Unique NameFC920599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:3..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920599 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.929e-51
Identity = 106/199 (53.27%), Postives = 135/199 (67.84%), Query Frame = 3
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEK 674
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR + A K
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALK 194          
BLAST of FC920599 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.042e-48
Identity = 107/202 (52.97%), Postives = 129/202 (63.86%), Query Frame = 3
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQR 683
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++A  A+K  R
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKALRAKKAAR 199          
BLAST of FC920599 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 97/213 (45.54%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQR--KRARIAEKKQRIARPKQR 704
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R  K+A+ A  K R +  ++R
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERR 210          
BLAST of FC920599 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 96/213 (45.07%), Postives = 123/213 (57.75%), Query Frame = 3
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQR--KRARIAEKKQRIARPKQR 704
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R  K+A+ A  K R +  ++R
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERR 210          
BLAST of FC920599 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 60/199 (30.15%), Postives = 101/199 (50.75%), Query Frame = 3
Query:  126 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNL-SKEDDVRKYVNTYRRT---------FTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAR 692
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  +E +V  Y+    ++              GK++ +  + +  +  + L+RKR    E+K+ + +
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERKEYLEK 198          
The following BLAST results are available for this feature:
BLAST of FC920599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO2.929e-5153.2740S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI1.042e-4852.9740S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA1.508e-3945.5440S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN9.773e-3945.0740S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU9.510e-1830.1540S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC32010E08EF RVDevelop1 Citrus clementina cDNA clone C32010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920599 ID=FC920599; Name=FC920599; organism=Citrus clementina; type=EST; length=713bp
ATATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACT
GGGTTAGTCTGATAGCCGCAGAGCAAAATGAAGTTCAATATTGCAAATCC
CACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCC
GAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTT
GGGGAGGAGTTCAAAGGTTACGTCTTTAAGATAATGGGAGGCTGTGACAA
GCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTC
TTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGAT
GGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCT
CTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTG
GACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCA
AAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTA
TGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTA
GCAAGGCTCCTAAAATTCAGAGGTTGGTGACTCCTTTGACTTTGCAGAGG
AAGCGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAGGCCCAAGCA
GAGGCTGCCGAAT
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