FC920600

Overview
NameFC920600
Unique NameFC920600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.154e-47
Identity = 89/135 (65.93%), Postives = 114/135 (84.44%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK 639
            IGIDLGTTYSCVGV+++G VEI+ANDQGNR TPS+VAFTD+ERL+G+AAK+QAA+NP  T+FD KRLIGRKF D  VQ D+K  P+++V+  GKP ++V  R GE K F PEEIS+M+L+KMKETAEA+LG+ ++
Sbjct:    9 IGIDLGTTYSCVGVFQHGRVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPQNTVFDAKRLIGRKFADPTVQSDLKHWPFQVVSEGGKPKVRVSYR-GEDKAFYPEEISSMVLSKMKETAEAYLGQPVR 142          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.154e-47
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG 627
            IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P+++VN   KP +QV  + GETK F PEEIS+M+LTKMKE AEA+LG
Sbjct:    7 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVVNDGDKPKVQVSYK-GETKAFYPEEISSMVLTKMKEIAEAYLG 136          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.065e-46
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG 627
            IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P++++N   KP +QV  + GETK F PEEIS+M+LTKMKE AEA+LG
Sbjct:    7 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK-GETKAFYPEEISSMVLTKMKEIAEAYLG 136          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 186.422 bits (472), Expect = 1.065e-46
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG 627
            IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P++++N   KP +QV  + GETK F PEEIS+M+LTKMKE AEA+LG
Sbjct:    7 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYK-GETKAFYPEEISSMVLTKMKEIAEAYLG 136          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 90/136 (66.18%), Postives = 114/136 (83.82%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFT+SERLIG+AAKNQ A+NP+ TIFD KRLIGR+F+D  VQ DMK  P+++   +GKP I+V+ + GE K F PEE+S+M+LTKM+ETAEA+LG  + D
Sbjct:    7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNPNNTIFDAKRLIGRRFDDATVQSDMKHWPFEVFAENGKPRIRVEYK-GERKSFYPEEVSSMVLTKMRETAEAYLGGTVTD 141          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.816e-46
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query:  229 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            T IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P+++VN   KP +QV  + GE++ F PEEIS+M+LTKMKE AEA+LG  +
Sbjct:    5 TAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQSDMKHWPFQVVNDGDKPKVQVNYK-GESRSFFPEEISSMVLTKMKEIAEAYLGHPV 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.816e-46
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query:  229 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            T IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P+++VN   KP +QV  + GE++ F PEEIS+M+LTKMKE AEA+LG  +
Sbjct:    5 TAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQSDMKHWPFQVVNDGDKPKVQVNYK-GESRSFFPEEISSMVLTKMKEIAEAYLGHPV 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.372e-46
Identity = 92/136 (67.65%), Postives = 110/136 (80.88%), Query Frame = 1
Query:  229 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            T IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF D  VQ DMK  P+++VN   KP +QV  + GE + F PEEIS+M+LTKMKE AEA+LG  +
Sbjct:    5 TAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVVNDGDKPKVQVNYK-GENRSFYPEEISSMVLTKMKEIAEAYLGHPV 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.047e-46
Identity = 91/135 (67.41%), Postives = 114/135 (84.44%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK 639
            IGIDLGTTYSCV  Y++  VEIIAN+QGNR+TPS+VAFT  ERLIG+AAKNQAA+NP  T+FD KRLIGR+F+D+ VQ+DMK  P+K+++ DG P I+VQ  + ETK FSP+EISAM+LTKMKE AEA +GKK++
Sbjct:   10 IGIDLGTTYSCVATYESS-VEIIANEQGNRVTPSFVAFTPQERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGNPVIEVQYLE-ETKTFSPQEISAMVLTKMKEIAEAKIGKKVE 142          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 4.047e-46
Identity = 91/135 (67.41%), Postives = 114/135 (84.44%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK 639
            IGIDLGTTYSCV  Y++  VEIIAN+QGNR+TPS+VAFT  ERLIG+AAKNQAA+NP  T+FD KRLIGR+F+D+ VQ+DMK  P+K+++ DG P I+VQ  + ETK FSP+EISAM+LTKMKE AEA +GKK++
Sbjct:   10 IGIDLGTTYSCVATYESS-VEIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGNPVIEVQYLE-ETKTFSPQEISAMVLTKMKEIAEAKIGKKVE 142          
The following BLAST results are available for this feature:
BLAST of FC920600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP76_PIG8.154e-4765.93Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP71_CANFA8.154e-4770.99Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HSP71_PONAB1.065e-4670.23Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN1.065e-4670.23Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HSP7A_DROME1.391e-4666.18Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HS71B_MOUSE1.816e-4667.65Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE1.816e-4667.65Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP71_RAT2.372e-4667.65Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP76_YEAST4.047e-4667.41Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST4.047e-4667.41Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC32010E11EF RVDevelop1 Citrus clementina cDNA clone C32010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920600 ID=FC920600; Name=FC920600; organism=Citrus clementina; type=EST; length=644bp
GGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACATCGAA
ACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTA
TAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCC
CTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAAT
TGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTG
GTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATC
ATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCAC
TGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCA
ATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTT
GAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGT
GAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGCGAGA
CCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAAGATG
AAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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