FC920600

Overview
NameFC920600
Unique NameFC920600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.107e-49
Identity = 93/136 (68.38%), Postives = 115/136 (84.56%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            IGIDLGTTYSCVGV++ G VEIIANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  ++FD KRLIGR+F+D ++Q D+K  P+K++N +GKP I V+ + G  K FSPEEIS+M+LTKMKETAEA+LG  +KD
Sbjct:    4 IGIDLGTTYSCVGVFQYGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPKNSVFDAKRLIGRRFDDSKIQEDIKHWPFKVINDNGKPKISVEFK-GANKCFSPEEISSMVLTKMKETAEAYLGTTVKD 138          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.107e-49
Identity = 95/152 (62.50%), Postives = 122/152 (80.26%), Query Frame = 1
Query:  184 LFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +  +S  K    + GTVIGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAF+ D ERLIG+AAKNQ   NP  T+FD KRLIGR ++DK+VQ D+K  P+K++N++ KPY++VQ+   E K F+PEE+SAM+L+KMKE AEA+LG ++
Sbjct:   14 ILTLSHCKSGKEEYGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDGERLIGDAAKNQLTSNPKNTLFDAKRLIGRDYDDKDVQGDIKRYPFKVINKNNKPYMKVQV-GSEEKGFAPEEVSAMVLSKMKEIAEAYLGTEV 164          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.107e-49
Identity = 96/157 (61.15%), Postives = 123/157 (78.34%), Query Frame = 1
Query:  169 VFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +F   +  +S  K    + GTVIGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAF+ D ERLIG+AAKNQ   NP  T+FD KRLIGR + DK+VQ D+K  P+K++N++ KPY++VQ+   E K F+PEE+SAM+L+KMKE AEA+LG ++
Sbjct:    9 IFLLCILTLSRCKSGKEEYGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDGERLIGDAAKNQLTSNPKNTLFDAKRLIGRDYHDKDVQGDIKRYPFKVINKNNKPYMKVQV-GSEEKGFAPEEVSAMVLSKMKEIAEAYLGTEV 164          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 6.670e-49
Identity = 92/140 (65.71%), Postives = 114/140 (81.43%), Query Frame = 1
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +   +GIDLGTTYSCV  + N  VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQAA+NP  T+FD KRLIGRKF+D EV  D K  P+K+++RDGKP +QV+ + GETK F+PEEIS+M+L+KMKETAE +LG  + D
Sbjct:    1 MSRAVGIDLGTTYSCVAHFSNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAINPHNTVFDAKRLIGRKFDDPEVTTDAKHFPFKVISRDGKPVVQVEYK-GETKTFTPEEISSMVLSKMKETAENYLGTTVND 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.670e-49
Identity = 96/138 (69.57%), Postives = 115/138 (83.33%), Query Frame = 1
Query:  226 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK 639
            G  IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  TIFD KRLIGRKFED  VQ DMK  P+++V+  GKP +QV+ + GE K F PEEIS+M+LTKMKE AEA+LG K++
Sbjct:    5 GPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDRKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYK-GEMKTFFPEEISSMVLTKMKEIAEAYLGGKVQ 141          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.670e-49
Identity = 93/138 (67.39%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  229 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            + IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAF+D+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF+D ++Q DMK  P+ +VN  GKP I+V+ + GE K F+PEEIS+M+LTKMKETAEA+LG+ +K+
Sbjct:    3 SAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFK-GERKTFAPEEISSMVLTKMKETAEAYLGQSVKN 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.670e-49
Identity = 93/138 (67.39%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  229 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            + IGIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAF+D+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF+D ++Q DMK  P+ +VN  GKP I+V+ + GE K F+PEEIS+M+LTKMKETAEA+LG+ +K+
Sbjct:    3 SAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDPKIQADMKHWPFTVVNDCGKPKIRVEFK-GERKTFAPEEISSMVLTKMKETAEAYLGQSVKN 139          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.670e-49
Identity = 97/137 (70.80%), Postives = 114/137 (83.21%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNR-DGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            IGIDLGTTYSCVGV+ +G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD  RLIGRKF+D  VQ DMK  P+K+VN   GKP +QV+ + GETK F+PEEIS+M+L KMKETAEAFLG  +KD
Sbjct:    6 IGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDANRLIGRKFDDGSVQSDMKHWPFKVVNAGGGKPKVQVEYK-GETKTFTPEEISSMVLVKMKETAEAFLGHAVKD 141          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 8.711e-49
Identity = 98/160 (61.25%), Postives = 122/160 (76.25%), Query Frame = 1
Query:  172 FFGGLFAISIA-----KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            +F  LF + +A            GTVIGIDLGTTYSCV V KNG VEIIANDQGNRITPS+VAFT+ ERL+GEAAKNQA  NP+ TIFD+KRLIGRKF++K + +D+K  P+ IVN   +P ++V +  G+ K F+PEEISAMIL+KMK+TAEA+LGK +
Sbjct:   12 YFVALFLLPMAFASGDDNSTESYGTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNV-GGKKKKFTPEEISAMILSKMKQTAEAYLGKPV 170          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.138e-48
Identity = 94/137 (68.61%), Postives = 116/137 (84.67%), Query Frame = 1
Query:  235 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDG-KPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +GIDLGTTYSCVGV+ +G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP  T+FD KRLIGRKF+D  VQ DMK  P+K+++ +G KP +QV+ + GE K+F+PEEIS+M+L KMKETAEAFLG  +KD
Sbjct:    7 VGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYK-GENKIFTPEEISSMVLLKMKETAEAFLGTTVKD 142          
The following BLAST results are available for this feature:
BLAST of FC920600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP68_DROME5.107e-4968.38Heat shock protein 68 OS=Drosophila melanogaster G... [more]
GRP78_ECHMU5.107e-4962.5078 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR5.107e-4961.1578 kDa glucose-regulated protein OS=Echinococcus g... [more]
HSP73_YEAST6.670e-4965.71Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP72_MOUSE6.670e-4969.57Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_ANOAL6.670e-4967.39Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL6.670e-4967.39Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]
HSP70_BRUMA6.670e-4970.80Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
GRP78_SCHPO8.711e-4961.2578 kDa glucose-regulated protein homolog OS=Schizo... [more]
HSP7A_CAEEL1.138e-4868.61Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionC32010E11EF RVDevelop1 Citrus clementina cDNA clone C32010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920600 ID=FC920600; Name=FC920600; organism=Citrus clementina; type=EST; length=644bp
GGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACATCGAA
ACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTA
TAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCC
CTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAAT
TGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTG
GTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATC
ATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCAC
TGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCA
ATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTT
GAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGT
GAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGCGAGA
CCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAAGATG
AAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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