FC920601

Overview
NameFC920601
Unique NameFC920601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14197 contig Ccv1_Contig14197:52..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_ASPOR (Alpha-glucosidase OS=Aspergillus oryzae GN=agdA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   33 EGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            E KRPFI++RSTF GSG +A HW GDN   W  + +SIS  L F +FG+PM G D CGF     EELCNRW+++ AF+PF R+H    +   E Y+W SV  + + A+ + Y +
Sbjct:  635 ENKRPFIIARSTFSGSGKWAGHWGGDNFSKWGSMFFSISQALQFSLFGIPMFGVDTCGFNGNTDEELCNRWMQLSAFFPFYRNHNVLSAIPQEPYRWASVIDATKAAMNIRYAI 748          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_TETPY (Lysosomal acid alpha-glucosidase OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.137e-26
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWES---VPHSARNALGMMYKL 374
            AL  +  K PFI+SRS   GSG +  HWTGDN   W+ L+YS+  + NF ++G+PM G+DICGF    T ELC RW++VGAFYPFSR+H +  +   E Y +     V  S++ +L + Y L
Sbjct:  555 ALKKMGNKLPFIISRSQIAGSGQFVQHWTGDNGSQWDFLQYSLGEIFNFNMYGIPMTGADICGFAQNTTAELCARWMQVGAFYPFSRNHNSNDTIPQEPYAFPDSTYVLDSSKKSLRLRYAL 676          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AMYG_DEBOC (Glucoamylase 1 OS=Debaryomyces occidentalis GN=GAM1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            KRPF++SRSTF  +G +  HW GDN   W    +SI    + GI G+P  G+D+CGF      ELC+RW+++G+F+PF R+H    +   E Y WESV  + R ++ + Y L
Sbjct:  615 KRPFMISRSTFPRAGKWTGHWGGDNTADWAYAYFSIPQAFSMGIAGLPFFGADVCGFNGNSDSELCSRWMQLGSFFPFYRNHNYLGAIDQEPYVWESVAEATRTSMAIRYLL 726          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_CANTS (Alpha-glucosidase OS=Candida tsukubaensis PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLK------------YSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            +RPF++SRST+ G+G +  HW GDN   W  L              SI  +L F IFG+ ++G+DICGF     EELCNRW+ +GAF PF R+H    +   E ++W+SV +++R A+   Y++
Sbjct:  707 ERPFLISRSTYPGAGKFTGHWLGDNYALWTILPGEEAYKAGAGMAQSIDGVLQFQIFGIHLIGADICGFNRNSDEELCNRWMMLGAFLPFMRNHNTIGAIAQEPFRWDSVANASRIAINKRYEI 830          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: MGAL1_HUMAN (Putative maltase-glucoamylase-like protein FLJ16351 OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.585e-21
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWES 329
            A+  + G+R  I++RSTF  SG +  H  G+N   W+ L  SI  M+ F +FG+P  G+DICGF+     E+C RW+++GAFYPFSR+H N  + R +   W S
Sbjct:  377 AVQEVTGQRGVIITRSTFPSSGRWGGHRLGNNTAAWDQLGKSIIGMMEFSLFGIPYTGADICGFFGDAEYEMCVRWMQLGAFYPFSRNHNNIGTRRQDPVAWNS 480          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AMYG_CANAL (Glucoamylase 1 OS=Candida albicans GN=GAM1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.585e-21
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            KRPFI+ RS+F GSG Y  HW GDN   +  + +SI   L+ G+ G+P  G D CGF      ELC+RW+++ +F+PF R+H    +   E Y WE+V  + + ++ + Y L
Sbjct:  605 KRPFIIGRSSFAGSGKYMGHWGGDNYADYYMMYFSIPQALSMGLSGIPFFGVDACGFNGNTDMELCSRWMQLASFFPFYRNHNVLGAIPQEPYVWEAVMKATKTSINVRYSL 716          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GLU2A_YEAST (Glucosidase 2 subunit alpha OS=Saccharomyces cerevisiae GN=ROT2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.099e-20
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQW-ESVPHSARNALGMMYKL 374
            KRPF+L+R+ F GS   AA WTGDN   W+ LK SI  +L+  I G+P +G+DI GF   PT EL  RW + G +YPF R HA+  + R E Y + E +    R+ + + Y L
Sbjct:  591 KRPFLLTRAFFAGSQRTAATWTGDNVANWDYLKISIPMVLSNNIAGMPFIGADIAGFAEDPTPELIARWYQAGLWYPFFRAHAHIDTKRREPYLFNEPLKSIVRDIIQLRYFL 703          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANAB_PIG (Neutral alpha-glucosidase AB OS=Sus scrofa GN=GANAB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELY----QWESVPHSARNALGMMYKL 374
            +RPF+LSR+ F GS  + A WTGDN   W+ LK SI   L+ G+ GV   G+D+ GF+  P  EL  RW ++GA+ PF R HA+  + R E +    Q++ +    R+ALG  Y L
Sbjct:  595 ERPFVLSRAFFAGSQRFGAVWTGDNTAEWDHLKISIPMCLSLGLVGVSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPTQYQDM---IRDALGQRYSL 707          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANAB_HUMAN (Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.317e-19
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHS-ARNALGMMYKL 374
            +RPF+L+R+ F GS  + A WTGDN   W+ LK SI   L+ G+ G+   G+D+ GF+  P  EL  RW ++GA+ PF R HA+  + R E +   S  +   R+ALG  Y L
Sbjct:  595 ERPFVLARAFFAGSQRFGAVWTGDNTAEWDHLKISIPMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDALGQRYSL 707          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANC_MOUSE (Neutral alpha-glucosidase C OS=Mus musculus GN=Ganc PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQW-ESVPHSARNALGMMYKL 374
            +RPF+LSRS F GS  Y A WTGDNK  W  LK SI  +L   + G+   G+D+ GF   P  EL  RW + GA+ PF R HA   + R E + + E      R A+   Y L
Sbjct:  548 ERPFVLSRSFFAGSQKYGAVWTGDNKAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPEAELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTQLIREAIRQRYAL 660          
The following BLAST results are available for this feature:
BLAST of FC920601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
AGLU_ASPOR4.307e-2747.37Alpha-glucosidase OS=Aspergillus oryzae GN=agdA PE... [more]
AGLU_TETPY2.137e-2645.90Lysosomal acid alpha-glucosidase OS=Tetrahymena py... [more]
AMYG_DEBOC3.773e-2341.96Glucoamylase 1 OS=Debaryomyces occidentalis GN=GAM... [more]
AGLU_CANTS4.928e-2340.32Alpha-glucosidase OS=Candida tsukubaensis PE=1 SV=... [more]
MGAL1_HUMAN1.585e-2143.27Putative maltase-glucoamylase-like protein FLJ1635... [more]
AMYG_CANAL1.585e-2140.18Glucoamylase 1 OS=Candida albicans GN=GAM1 PE=1 SV... [more]
GLU2A_YEAST5.099e-2044.25Glucosidase 2 subunit alpha OS=Saccharomyces cerev... [more]
GANAB_PIG1.938e-1942.24Neutral alpha-glucosidase AB OS=Sus scrofa GN=GANA... [more]
GANAB_HUMAN4.317e-1941.59Neutral alpha-glucosidase AB OS=Homo sapiens GN=GA... [more]
GANC_MOUSE9.617e-1942.48Neutral alpha-glucosidase C OS=Mus musculus GN=Gan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E12EF RVDevelop1 Citrus clementina cDNA clone C32010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920601 ID=FC920601; Name=FC920601; organism=Citrus clementina; type=EST; length=374bp
ATCGCCGGGCATGAGTAGCTCTTCTAGGGCTCGAAGGCAAGAGGCCATTC
ATATTATCACGCTCTACTTTTGTTGGTTCTGGTCATTATGCCGCACACTG
GACGGGTGATAATAAGGGAACATGGGAAGATCTAAAGTATTCTATTTCAA
CCATGCTGAACTTCGGCATATTTGGGGTTCCGATGGTTGGTTCCGATATA
TGTGGGTTCTATCCTGCCCCAACAGAAGAGCTTTGTAACCGATGGATAGA
AGTAGGTGCATTCTATCCGTTCTCAAGGGATCATGCAAACTACTACTCCC
CAAGACCGGAGCTTTATCAGTGGGAGTCAGTACCACACTCCGCCCGAAAT
GCTCTGGGTATGATGTATAAACTA
back to top