FC920603

Overview
NameFC920603
Unique NameFC920603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920603_ssr562 microsatellite FC920603_ssr562:562..571. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:43..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.410e-88
Identity = 165/242 (68.18%), Postives = 187/242 (77.27%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIF TGV LG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  AF +AQLVAT IAVYANWSFA IEG GWGWAGVIWLY++VTY PLD++KF IRY LSGKAWD +LE + AFT KKD+GKE RE QW  AQRTLHGL  P    FS T       +    ++RRAE+ARLRE
Sbjct:  687 NDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRIFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVTYIPLDLIKFLIRYALSGKAWDLVLEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRE 928          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.406e-88
Identity = 163/242 (67.36%), Postives = 186/242 (76.86%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIF TG+ LG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANWSFA IEG GWGWAGVIW+Y+LV Y PLDI+KF IRY LSG+AWD + E + AFT KKD+GKE+RE QW  AQRTLHGL  P    FS         +    ++RRAE+ARLRE
Sbjct:  688 NDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGGYLAMMTVIFFWAAYKTNFFPHVFGVSTLEKTATDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGFLLVIAFVIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWIYNLVFYIPLDIIKFFIRYALSGRAWDLVFERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARLRE 929          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.142e-88
Identity = 160/242 (66.12%), Postives = 188/242 (77.69%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIFATGV  GSY+A+MTV+FFW   KTDFF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWS++ERPG+LL  AF++AQLVAT IAVYANWSFA IEG GWGWAGVIWLY++V Y PLDI+KF IRY LSG+AWD ++E + AFT +KD+GKE+RE QW  AQRTLHGL  P    F          +    ++RRAE+ARLRE
Sbjct:  687 NDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWAAYKTDFFPRTFGVSTLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSYVERPGMLLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFPERTHFNELSQMAEEAKRRAEIARLRE 928          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 9.142e-88
Identity = 158/242 (65.29%), Postives = 189/242 (78.10%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIFATGV  GSY+A+MTV+FFW+  KTDFF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWSF+ERPG+ L  AF++AQLVAT IAVYANWSFA IEG GWGWAGVIWLY+++ Y PLD +KF IRY LSG+AWD ++E + AFT +KD+GKE+RE QW  AQRTLHGL  P    F+    +    +    ++RRAE+ARLRE
Sbjct:  691 NDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWVSYKTDFFPRTFGVATLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGIFLMIAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTKMFTDRTHVSELNQMAEEAKRRAEIARLRE 932          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.660e-87
Identity = 163/242 (67.36%), Postives = 185/242 (76.45%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIF TGV LG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  AF IAQLVAT IAVYANWSFA IEG GWGWAGVIWLY++V Y PLD+  F IRY LSGKAWD ++E + AFT KKD+GKE+RE QW  AQRTLHGL  P    FS T       +    ++RRAE+ARLRE
Sbjct:  687 NDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFMERPGLLLVVAFFIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDLXXFLIRYALSGKAWDLVIEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRE 928          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA2_SOLLC (Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.926e-87
Identity = 162/242 (66.94%), Postives = 185/242 (76.45%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIF TGV LG YLA+MTV+FFW   +T FF   FGV +L RT  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  A ++AQLVAT IAVYA+WSFA IEG GWGWAGVIWLY+LV YFPLDI+KF IRY LSG+AWD +LE + AFT KKD+GKE+RE QW  AQRTLHGL  P    FS         +    ++RRAE+AR RE
Sbjct:  435 NDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETQFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVALIVAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIKLFSEATNFNELNQLAEEAKRRAEIARQRE 676          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.159e-74
Identity = 144/257 (56.03%), Postives = 178/257 (69.26%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRP-------------DEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLH------HPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PD WKLKEIFATGV LG+YLAIMTVVFFW   +T+FF + F VR+                  ++M +A+YLQVS ISQALIFVTRSRSWSF+ERPG LL  AF+IAQLVA+ I+  ANW FA I   GWGW GVIW++++VTY  LD +KF +RY LSGK+WD ++E +TA T KK++G+EER A W   +RT HGL       + + +A  L    + A       +RRAE+AR+RE
Sbjct:  683 NDGTIMTISKDRVKPSPTPDCWKLKEIFATGVVLGAYLAIMTVVFFWAAYETNFFHNIFHVRNFNQHHFKMKDKKVAAHLNEQMASAVYLQVSTISQALIFVTRSRSWSFVERPGFLLVIAFLIAQLVASVISAMANWPFAGIRSIGWGWTGVIWIFNIVTYMLLDPIKFLVRYALSGKSWDRMVEGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVYERNSATELNNMAEEA-------KRRAEIARMRE 932          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 1.851e-72
Identity = 135/238 (56.72%), Postives = 173/238 (72.69%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRV+PSP P+SWKL +IFATG+ +G+YLA++TV+F+W++  T FF   F V+S+    +++ +A+YLQVSIISQALIFVTRSR WSF ERPG LL  AF++AQL AT IAVYAN SFA+I G GW WAGVIWLYSL+ Y PLD++KF   Y LSG+AW+ +L+ KTAFT KKDYGK++       +QR+        ++A  L      A      ++RRAE+ARL E
Sbjct:  690 NDGTIMTISKDRVRPSPTPESWKLNQIFATGIVIGTYLALVTVLFYWIIVSTTFFEKHFHVKSIANNSEQVSSAMYLQVSIISQALIFVTRSRGWSFFERPGTLLIFAFILAQLAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFVFHYALSGEAWNLVLDRKTAFTYKKDYGKDDGSPNVTISQRS--------RSAEELRGSRSRASWIAEQTRRRAEIARLLE 919          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMAX_ARATH (Putative ATPase, plasma membrane-like OS=Arabidopsis thaliana GN=At4g11730 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 110/175 (62.86%), Postives = 131/175 (74.86%), Query Frame = 2
Query:    2 NDGTIMTISKDRV-KPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLEN 523
            N+ T   I+ D V  PSP PDS KLKEIFATGV  GSY+A++TVVFFW   +TD F   F VR LR    EMM ALYLQVSI+SQAL FV +SRSW F+ERPG LL  +FV  Q +AT +AVYA+W  ARIEG GW WAGVIWLY+++ +FPLDI+KFGIRYIL+GKA  +L +N
Sbjct:  595 NEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKA-QSLFDN 768          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_DICDI (Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 77/181 (42.54%), Postives = 107/181 (59.12%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSF---------------ARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGK 499
            NDGT++TISKDRV+   +PD W L E+F   +  G YL   T+VFF ++    +F DA  +R L    +E+   +YLQVSI   A IFV+RS+ +S+ ERPG L+  AFV++Q+VATFI VY    +                  +GCGWGWA   W++  + Y P+D +K G+ YIL GK
Sbjct:  823 NDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRIL--TDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGK 1001          
The following BLAST results are available for this feature:
BLAST of FC920603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PMA1_SOLLC1.410e-8868.18Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA1_NICPL2.406e-8867.36Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA11_ARATH3.142e-8866.12ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA4_ARATH9.142e-8865.29ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_NICPL2.660e-8767.36Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA2_SOLLC5.926e-8766.94Plasma membrane ATPase 2 (Fragment) OS=Solanum lyc... [more]
PMA7_ARATH1.159e-7456.03ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMA10_ARATH1.851e-7256.72ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]
PMAX_ARATH2.428e-5662.86Putative ATPase, plasma membrane-like OS=Arabidops... [more]
PMA1_DICDI8.121e-3642.54Probable plasma membrane ATPase OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC32010F03EF RVDevelop1 Citrus clementina cDNA clone C32010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920603 ID=FC920603; Name=FC920603; organism=Citrus clementina; type=EST; length=732bp
AAATGACGGAACAATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCC
CTCAACCAGACAGCTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGCG
CTTGGAAGTTACTTGGCCATCATGACTGTTGTATTCTTCTGGTTAATGAG
GAAGACTGACTTTTTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTA
GACCCGATGAGATGATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGC
CAGGCCCTTATTTTTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACG
CCCTGGACTTCTCTTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAA
CTTTCATAGCGGTCTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGT
GGCTGGGGCTGGGCCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTT
TCCTCTTGACATACTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGG
CTTGGGATACTCTTCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGAC
TACGGTAAAGAAGAGAGAGAGGCACAATGGGTAGCCGCACAAAGAACCTT
GCACGGTCTTCACCACCCGAAACAAACGGCATTTTCTCTGACAAGACAGT
TACAGGGAGCTTTCAGAGATCGCCGAGCAAGCCAGAGACGTGCTGAGGTG
GCCAGGCTGAGGGAGTGCACACGCTGAAAGGG
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