FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BACHK (Phosphoserine aminotransferase OS=Bacillus thuringiensis subsp. konkukian GN=serC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S + EK+T IP  D
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKFTTIPKLD 134          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BACAA (Phosphoserine aminotransferase OS=Bacillus anthracis (strain A0248) GN=serC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S + EK+T IP  D
Sbjct:    3 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKFTTIPKLD 135          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIAD (Phosphoserine aminotransferase OS=Acinetobacter sp. (strain ADP1) GN=serC PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSG 644
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR K++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+P+NL   N   DYI TG WS+KA KEAQ++ +  VI +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSKDYVAVAEKAEADLRKLMNIPENYQVLFLQGGASLQFSAIPMNLLGKNSKADYIHTGIWSEKALKEAQRYGDINVIEAG 121          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_POLNA (Phosphoserine aminotransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=serC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 70/129 (54.26%), Postives = 97/129 (75.19%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF+AGPANLPE+VL +A +E+ +W GSGMSVMEMSHRGKEF SI E AE+D R L+ IP+ + +LF+QGG   + A VPLN+ +     D++VTGSWSDK+ KEA+K+C+ Q+  + ++  +T +P
Sbjct:    3 RPFNFSAGPANLPEEVLRQAAAEMLDWHGSGMSVMEMSHRGKEFISIYEHAEADFRELMEIPEHFKILFMQGGGLAENAIVPLNI-SRGGLADFVVTGSWSDKSQKEARKYCDVQIAATNESSAHTSLP 130          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BACCZ (Phosphoserine aminotransferase OS=Bacillus cereus (strain ZK / E33L) GN=serC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A + LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S + EK+T IP  D
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEASNLLRELMNIPNEYDVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKFTTIPKLD 134          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BACCR (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=serC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SIIE+A + LR L++IP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S + EK+T IP  D
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELLNYNGTGMSIMEMSHRSSYFQSIIEEASNLLRELMSIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSEQEKFTTIPKLD 134          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BACC1 (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 10987) GN=serC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLN+        YI+TGSWS KA +EA+K    QVI S + EK+T IP  D
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNVMNTYKKAGYILTGSWSKKAMQEAEKVGEVQVIASSENEKFTTIPRLD 134          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSESM (Phosphoserine aminotransferase OS=Pseudomonas syringae pv. tomato GN=serC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35
Identity = 77/129 (59.69%), Postives = 86/129 (66.67%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LPE VLL+AQ+EL +W G G+SVMEMSHR  EF SI  KAE DLR LL+IP  Y VLFLQGGA+ QFA + LNL   N   DYI TG WS KA  EA ++    V  S KA  Y  IP
Sbjct:    4 RAFNFCAGPAALPEAVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIANKAEQDLRDLLSIPSNYKVLFLQGGASQQFAQIALNLLPENGKADYIDTGIWSQKAIDEASRYGTINVAASAKAYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_POLSJ (Phosphoserine aminotransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=serC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF+AGPANLPE+VL +A +E+ +W GSGMSVMEMSHRGKEF SI E AE+D R L+ IP  + +LF+QGG   + A VPLNL +     D++VTGSWSDK+ KEA+K+C+ Q+  +     +T++P
Sbjct:    3 RPFNFSAGPANLPEEVLQQAAAEMLDWHGSGMSVMEMSHRGKEFISIYENAEADFRELMAIPPNFKILFMQGGGLAENAIVPLNL-SRGASADFVVTGSWSDKSQKEARKYCDVQIAATNAGSDHTQLP 130          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURCM (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=serC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGK-AEKYTKIP 671
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  SGK A+ +T+ P
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGSRQTADFVVTGSWSQKSFNEAKKYGTPHLAASGKTADGFTRAP 131          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BACHK1.606e-3556.39Phosphoserine aminotransferase OS=Bacillus thuring... [more]
SERC_BACAA1.606e-3556.39Phosphoserine aminotransferase OS=Bacillus anthrac... [more]
SERC_ACIAD1.606e-3558.33Phosphoserine aminotransferase OS=Acinetobacter sp... [more]
SERC_POLNA2.097e-3554.26Phosphoserine aminotransferase OS=Polaromonas naph... [more]
SERC_BACCZ2.097e-3555.64Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_BACCR2.739e-3555.64Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_BACC12.739e-3556.39Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_PSESM3.577e-3559.69Phosphoserine aminotransferase OS=Pseudomonas syri... [more]
SERC_POLSJ4.672e-3555.04Phosphoserine aminotransferase OS=Polaromonas sp. ... [more]
SERC_BURCM6.101e-3556.15Phosphoserine aminotransferase OS=Burkholderia amb... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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