FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEU2 (Phosphoserine aminotransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=serC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 77/129 (59.69%), Postives = 86/129 (66.67%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LPE VLL+AQ+EL +W G G+SVMEMSHR  EF SI  KAE DLR LL+IP  Y VLFLQGGA+ QFA + LNL   N   DYI TG WS KA  EA ++    V  S KA  Y  IP
Sbjct:    4 RAFNFCAGPAALPEAVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIATKAEQDLRDLLSIPSNYKVLFLQGGASQQFAQIALNLLPENGKADYIDTGIWSQKAIDEASRYGAINVAASAKAYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_CHRVO (Phosphoserine aminotransferase OS=Chromobacterium violaceum GN=serC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            +V+NF+AGPA LP +VL +AQSEL +W GSGMSVMEMSHRGKEF  II  AE DLR L+ IP  Y VLFLQGGA+ QFA  PLNL    D +D + TG WS  A KEA+++    V+ S +   +  +P
Sbjct:    3 KVYNFSAGPAVLPHQVLAEAQSELLDWHGSGMSVMEMSHRGKEFMEIIHDAEQDLRQLMGIPAGYKVLFLQGGASLQFAMAPLNLLGDKDSIDIVNTGHWSKLAIKEAKRYAKVNVVASSEDRNFCYVP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURA4 (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain MC40-6) GN=serC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGK-AEKYTKIP 671
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  SGK A+ +T+ P
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFNEAKKYGTPHLAASGKTADGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIBT (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=serC PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSG 644
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIBC (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ACICU) GN=serC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSG 644
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIB5 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB0057) GN=serC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSG 644
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIB3 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB307-0294) GN=serC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSG 644
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURS3 (Phosphoserine aminotransferase OS=Burkholderia sp. (strain 383) GN=serC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 72/130 (55.38%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK-YTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  +GK E  YT+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFTEAKKYGTPHLAATGKTEDGYTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_THIDA (Phosphoserine aminotransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=serC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 71/131 (54.20%), Postives = 91/131 (69.47%), Query Frame = 3
Query:  288 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            ++NF+AGPA LP+ VL + Q+EL +W GSGMSVMEMSHRGKEF  I  +AE+DLR L+ IP  Y VLFLQGGA++QFA VP+NL       DY+ TG WS KA KEA+K+    V+ S +   ++  P  D
Sbjct:    3 IYNFSAGPAVLPKDVLQQVQAELVDWHGSGMSVMEMSHRGKEFMGIAAEAEADLRELMAIPANYKVLFLQGGASSQFAMVPMNLLRGKASADYLNTGEWSKKAIKEAKKYAAVNVVASSEDRNFSYAPTQD 133          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_STRM5 (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=serC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF+AGPA LPE VL +AQ+E+ +W GSG S++EMSHRG EF S+  +AE+DLR LL+IP++Y+VLFL GGATTQ A +PLN   P    DY+V+G W   A K+A  + +  +  S +A  Y ++P
Sbjct:    3 RAFNFSAGPATLPESVLRQAQAEMLDWHGSGASIVEMSHRGAEFMSVAAEAEADLRRLLDIPEDYAVLFLSGGATTQQALIPLNFAAPGQRADYVVSGHWGKTAVKQAGVYVDVNIAASSEANGYRELP 131          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PSEU27.968e-3559.69Phosphoserine aminotransferase OS=Pseudomonas syri... [more]
SERC_CHRVO7.968e-3555.81Phosphoserine aminotransferase OS=Chromobacterium ... [more]
SERC_BURA47.968e-3556.15Phosphoserine aminotransferase OS=Burkholderia amb... [more]
SERC_ACIBT1.359e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIBC1.359e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB51.359e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB31.359e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_BURS32.318e-3455.38Phosphoserine aminotransferase OS=Burkholderia sp.... [more]
SERC_THIDA3.028e-3454.20Phosphoserine aminotransferase OS=Thiobacillus den... [more]
SERC_STRM53.028e-3451.94Phosphoserine aminotransferase OS=Stenotrophomonas... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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