FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_STRMK (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=serC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF+AGPA LPE VL +AQ+E+ +W GSG S++EMSHRG EF S+  +AE+DLR LL+IP +Y+VLFL GGATTQ A +PLN   P    DY+V+G W   A K+A  + +  +  S +A  Y ++P
Sbjct:    3 RAFNFSAGPATLPESVLRQAQAEMLDWHGSGASIVEMSHRGAEFMSVAAEAEADLRRLLDIPDDYAVLFLSGGATTQQALIPLNFAAPGQRADYVVSGHWGKTAVKQAGVYVDVNIAASSEANGYRELP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_NITEU (Phosphoserine aminotransferase OS=Nitrosomonas europaea GN=serC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            +++NF+AGPA LPE+VL +A+ E+ +W GSGMSVMEMSHRGKEF SI ++ ES LR L  IP  Y VLFLQGGA++QFA VP+NL       DY+ TG WS KA  EA+ + + Q+  S +++ +  +P
Sbjct:    3 KIYNFSAGPAVLPEEVLEQAREEMLDWHGSGMSVMEMSHRGKEFMSIADETESALRELAGIPDHYKVLFLQGGASSQFAMVPMNLLGKKGKADYVNTGQWSAKAISEAKNYGSVQIAASSESDGFNSVP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEAE (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa GN=serC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEAB (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEA8 (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=serC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_MARMS (Phosphoserine aminotransferase OS=Marinomonas sp. (strain MWYL1) GN=serC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNF 677
            RV+NF +GPA LPE VL KAQ+EL +W G+G+SVMEMSHR  EF SI+  A++ L  L+NI  +Y +LF+QGGA+T F+ +P NL    +   ++ TG+WS KA KEA+K+    V+ S KA+ YT +P+F
Sbjct:    3 RVYNFCSGPAALPEAVLKKAQAELLDWHGAGVSVMEMSHRSSEFMSILASAKARLSRLMNISDDYEILFVQGGASTLFSQIPANLANGFESACFLDTGAWSSKAIKEAKKYTKVNVVGSSKAQNYTTVPDF 133          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURPP (Phosphoserine aminotransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=serC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGK-AEKYTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W+GSGMSVMEMSHRGKEF SI E+A  DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+FKEAQK+    +  SG+ AE +T+ P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWQGSGMSVMEMSHRGKEFMSIHEEALVDLRDLLEVPASHRILFLQGGGLGENAIVPMNLMGAKPRADFVVTGSWSQKSFKEAQKYGTVHLAASGQTAEGFTRAP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEA7 (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain PA7) GN=serC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y  IP
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEHDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGRVNVAASAKEYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_VIBVU (Phosphoserine aminotransferase OS=Vibrio vulnificus GN=serC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTK 665
            D VFNF+AGPA LP+ V+ +AQ EL NW+G G SVME+SHR KEF ++ E++E DLR LLNIP  Y VLF QGGA  QFAAVPLNL        YI  G W++ A +EA+K+C P V +  KAEK  K
Sbjct:    6 DNVFNFSAGPAALPKPVMQQAQQELLNWQGLGTSVMEISHRSKEFIAVAEQSEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDATTATYIDAGYWAESAVEEAKKYCQPDV-FVAKAEKEGK 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_VIBVY (Phosphoserine aminotransferase OS=Vibrio vulnificus (strain YJ016) GN=serC PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEK 656
            D VFNF+AGPA LP+ V+ +AQ EL NW+G G SVME+SHR KEF ++ E++E DLR LLNIP  Y VLF QGGA  QFAAVPLNL        YI  G W++ A +EA+K+C P V +  KAEK
Sbjct:    6 DNVFNFSAGPAALPKPVMQQAQQELLNWQGLGTSVMEISHRSKEFIAVAEQSEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDATTATYIDAGYWAESAVEEAKKYCQPDV-FVAKAEK 129          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_STRMK5.165e-3451.94Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_NITEU5.165e-3452.71Phosphoserine aminotransferase OS=Nitrosomonas eur... [more]
SERC_PSEAE6.746e-3455.81Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_PSEAB6.746e-3455.81Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_PSEA86.746e-3455.81Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_MARMS6.746e-3451.15Phosphoserine aminotransferase OS=Marinomonas sp. ... [more]
SERC_BURPP6.746e-3456.15Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_PSEA78.810e-3455.81Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_VIBVU1.151e-3357.03Phosphoserine aminotransferase OS=Vibrio vulnificu... [more]
SERC_VIBVY1.503e-3357.60Phosphoserine aminotransferase OS=Vibrio vulnificu... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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