FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIF2 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=serC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  288 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            +FNF+AGPA LP  VL + Q+EL +W GSGMSVMEMSHRG EF  I  +AE DLR LL+IP  Y +LFLQGGAT QFA VPLNL   +    Y+ TG WS KA  EA++F   ++  S +    + +P
Sbjct:    5 IFNFSAGPAVLPHVVLEQVQAELLDWHGSGMSVMEMSHRGPEFMKIAAEAEQDLRDLLDIPANYKILFLQGGATLQFAMVPLNLMRGHGKASYVQTGIWSKKAIAEARRFTAVEIAASNEDRHASYVP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_DELAS (Phosphoserine aminotransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=serC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF-CNPQVIWSGKAEKYTKIP 671
            +R +NF+AGPA +P +VL +A +E+ +W GSGMSVMEMSHRGKEF SI E+AE+DLR LL +P E+ +LF+QGG   + A VPLNL      VD++++GSWS K+ KEA+K+  +  +  SG+  K+T +P
Sbjct:    2 NRPYNFSAGPAAIPAEVLQQAAAEMLDWHGSGMSVMEMSHRGKEFISIYEQAEADLRELLAVPPEFKILFMQGGGLAENAIVPLNLSRAG-TVDFVLSGSWSQKSAKEARKYVADAHIAASGEDGKFTALP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_XENNE (Phosphoserine aminotransferase OS=Xenorhabdus nematophilus GN=serC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 65/118 (55.08%), Postives = 85/118 (72.03%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            ++V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF ++  +AE DLR LL IP+ Y+VLF  GGA  QF+A+P NL       DYIV+G WS+ A KEA+K+C P +I
Sbjct:    2 NQVYNFSAGPAMLPAEVLRRAEQELCNWHGLGTSVMEISHRSKEFIAVAAEAEKDLRDLLAIPENYNVLFCHGGARGQFSALPQNLLGDKSTADYIVSGYWSECAAKEAEKYCTPNII 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_COXBU (Phosphoserine aminotransferase OS=Coxiella burnetii GN=serC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QF  VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   YT IP+
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFDMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNYTGIPD 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_XYLFA (Phosphoserine aminotransferase OS=Xylella fastidiosa GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            R+FNF+ GPA LPE VL +AQ E+  W   G SVME+SHR  EF  + +  ESDLR LL +P +Y+VLFL GGATTQ A +PLN   P    DY+VTG WS  A K+A  + N  V+  G+   +  IP+
Sbjct:    4 RIFNFSPGPATLPEPVLRQAQDEMLEWNAVGASVMEISHRTVEFMELAKGIESDLRCLLGVPDDYAVLFLSGGATTQQALLPLNFAAPGQTADYVVTGHWSKTALKQASPYVNINVVADGERGGFQHIPS 133          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALTY (Phosphoserine aminotransferase OS=Salmonella typhimurium GN=serC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALTI (Phosphoserine aminotransferase OS=Salmonella typhi GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALSV (Phosphoserine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALPC (Phosphoserine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALPB (Phosphoserine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ACIF24.834e-3253.91Phosphoserine aminotransferase OS=Acidithiobacillu... [more]
SERC_DELAS8.246e-3251.91Phosphoserine aminotransferase OS=Delftia acidovor... [more]
SERC_XENNE1.407e-3155.08Phosphoserine aminotransferase OS=Xenorhabdus nema... [more]
SERC_COXBU1.407e-3148.46Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_XYLFA1.837e-3150.00Phosphoserine aminotransferase OS=Xylella fastidio... [more]
SERC_SALTY1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella typhi... [more]
SERC_SALTI1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella typhi... [more]
SERC_SALSV1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella schwa... [more]
SERC_SALPC1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella parat... [more]
SERC_SALPB1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella parat... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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