FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALNS (Phosphoserine aminotransferase OS=Salmonella newport (strain SL254) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALHS (Phosphoserine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALGL (Phosphoserine aminotransferase OS=Salmonella gallinarum GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALG2 (Phosphoserine aminotransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALEP (Phosphoserine aminotransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALDC (Phosphoserine aminotransferase OS=Salmonella dublin (strain CT_02021853) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALCH (Phosphoserine aminotransferase OS=Salmonella choleraesuis GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SALA4 (Phosphoserine aminotransferase OS=Salmonella agona (strain SL483) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_RALPJ (Phosphoserine aminotransferase OS=Ralstonia pickettii (strain 12J) GN=serC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLN----LCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            RV+NF+AGPA LP +VL +A+ E+ +W GSGMSVMEMSHRG+EF++I+  A SDLR LL +P  Y +LFLQGGA  + A VPLN    L       DY+VTG+WS K+ +EA+K+    +  + + E++ KIP+
Sbjct:   14 RVYNFSAGPAVLPLEVLEQAKEEMVSWHGSGMSVMEMSHRGREFENILAAAFSDLRQLLAVPDNYEILFLQGGAIAENAIVPLNLMRRLSADAPKADYVVTGTWSVKSQQEARKYGEVNIAATSETERFHKIPD 147
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_GEOKA (Phosphoserine aminotransferase OS=Geobacillus kaustophilus GN=serC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 67/132 (50.76%), Postives = 90/132 (68.18%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD 680
            R +NF AGP+ LP  VL +AQ EL N++ +GMSVME+SHR KE++++   A+  L+ LLN+P  Y +LFLQGGA+ QF+ VP+NL T      Y++TG+WS+KA KEAQK     V+ S K   YT IP  D
Sbjct:    3 RAYNFNAGPSALPLPVLERAQKELLNFQNTGMSVMELSHRSKEYEAVHHAAKERLKRLLNVPDGYDILFLQGGASLQFSMVPMNLLTEGKIGCYVLTGAWSEKALKEAQKIGLTTVVASSKEANYTYIPPLD 134
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_SALNS1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella newpo... [more]
SERC_SALHS1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella heide... [more]
SERC_SALGL1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella galli... [more]
SERC_SALG21.837e-3156.41Phosphoserine aminotransferase OS=Salmonella galli... [more]
SERC_SALEP1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella enter... [more]
SERC_SALDC1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella dubli... [more]
SERC_SALCH1.837e-3156.41Phosphoserine aminotransferase OS=Salmonella chole... [more]
SERC_SALA41.837e-3156.41Phosphoserine aminotransferase OS=Salmonella agona... [more]
SERC_RALPJ3.133e-3150.75Phosphoserine aminotransferase OS=Ralstonia picket... [more]
SERC_GEOKA3.133e-3150.76Phosphoserine aminotransferase OS=Geobacillus kaus... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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