FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.770e-22
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTH--SQVIGMTSGSSSS 316
            A ++   I+LLDEATSALD+ESER VQEALD A  G+TTIV+AHRLSTIRNA VI V+ +G++ E GSH  LL+   DG Y  +++LQ+  +  S  I +  G +SS
Sbjct:  499 AIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLE-KLDGQYTSLVRLQQVDNKESDHISVEEGQASS 604          

HSP 2 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++   ++LLDEATSALD++SE  VQ+AL+R   G+T++V+AHRLSTI+    IAV+++G V E G+HS LL   P G Y  ++ LQR
Sbjct: 1134 AVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQR 1222          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB12B_ARATH (ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.617e-22
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT---HSQVIGMTSGSS 310
            A ++   ++LLDEATSALD ESER VQEALDR    +TT+VVAHRLST+RNA +IAVI  GK+ E GSHS LLK++  G Y+++I+ Q       ++   M SGSS
Sbjct:  520 AILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSV-GAYSQLIRCQEINKGHDAKPSDMASGSS 624          

HSP 2 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V++ +I+LLDEATSALDAESER VQ+ALDR    +TT+VVAHRLSTI+NA VIA++ +G +AE G+H  L+K +  G YA ++QL
Sbjct: 1182 AIVKEPKILLLDEATSALDAESERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKID-GGVYASLVQL 1267          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR3_CAEEL (Multidrug resistance protein 3 OS=Caenorhabditis elegans GN=pgp-3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 283
            A VRK +I+LLDEATSALD ESER VQ ALD+A  G+TT+ +AHRLSTIRNA  I V D G +AE G+H  L+  + DG YA M++ Q    ++
Sbjct:  528 AIVRKPQILLLDEATSALDTESERMVQTALDKASEGRTTLCIAHRLSTIRNASKILVFDQGLIAERGTHDELISKD-DGIYASMVKAQEIERAK 620          

HSP 2 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE+ VQEALD+A  G+T +V+AHRLSTI+NA  I V  +GK  E G+H  LL     G Y R+++ Q
Sbjct: 1181 AIVRDPKILLLDEATSALDTESEKIVQEALDKARLGRTCVVIAHRLSTIQNADKIIVCRNGKAIEEGTHQTLLARR--GLYYRLVEKQ 1266          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR2_MOUSE (Multidrug resistance protein 2 OS=Mus musculus GN=Abcb4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLSTIRNA VIA  +DG + E GSHS L+K   +G Y R++ +Q
Sbjct:  543 ALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKK--EGIYFRLVNMQ 628          

HSP 2 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS 280
            A +R+  ++LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI++GKV E G+H  LL     G Y  M+ +Q  T +
Sbjct: 1185 ALIRQPRVLLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQK--GIYFSMVNIQAGTQN 1275          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  +DG + E GSHS L+K   +G Y R++ +Q
Sbjct:  543 ALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKK--EGIYFRLVNMQ 628          

HSP 2 Score: 99.3673 bits (246), Expect = 8.910e-21
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS 280
            A +R+  ++LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VID+GKV E G+H  LL     G Y  M+ +Q  T +
Sbjct: 1187 ALIRQPRVLLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIDNGKVKEHGTHQQLLAQK--GIYFSMVNIQAGTQN 1277          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_HUMAN (ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.375e-21
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +++  +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ DG+V E G+H  LLK    G YA +I+ Q
Sbjct:  625 ALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWEAGTHEELLKKG--GLYAELIRRQ 710          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.375e-21
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV-----IGMTSGSSSSAR 322
            A ++   I+LLDEATSALD+ESER VQEAL+ A  G+TTI++AHRLSTIRNA VI+V+ +G + E GSH  L++ N DG Y+ ++ LQ+     +     IG  S  S   R
Sbjct:  511 AIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELME-NIDGQYSTLVHLQQIEKQDINVSVKIGPISDPSKDIR 621          

HSP 2 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++LLDEATSALD++SER VQ+AL+R   G+T++V+AHRLSTI+N   IAV+D GK+ E G+HS LL   P G Y  ++ LQ
Sbjct: 1149 AVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  +DG + E GSHS L+K   +G Y +++ +Q
Sbjct:  546 ALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKK--EGVYFKLVNMQ 631          

HSP 2 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS 280
            A +R+ +I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I V  +G+V E G+H  LL     G Y  M+ +Q  T +
Sbjct: 1195 ALIRQPQILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQK--GIYFSMVSVQAGTQN 1285          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            A ++  +I+LLDEATSALDAE+E  VQEALDR   G+T +V+AHRLSTI+NA+++AV+D GK+ E G H  LL + P+G Y +++  Q F
Sbjct:  647 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL-SKPNGIYRKLMNKQSF 735          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_PONAB (ATP-binding cassette sub-family B member 8, mitochondrial OS=Pongo abelii GN=ABCB8 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +++  +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ DG+V E G+H  LLK    G YA +I+ Q
Sbjct:  608 ALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHRIVVMADGRVWEAGTHEELLKKG--GLYAELIRRQ 693          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
AB18B_ARATH2.770e-2254.21ABC transporter B family member 18 OS=Arabidopsis ... [more]
AB12B_ARATH3.617e-2254.72ABC transporter B family member 12 OS=Arabidopsis ... [more]
MDR3_CAEEL6.170e-2256.38Multidrug resistance protein 3 OS=Caenorhabditis e... [more]
MDR2_MOUSE6.170e-2261.36Multidrug resistance protein 2 OS=Mus musculus GN=... [more]
MDR2_RAT8.059e-2260.23Multidrug resistance protein 2 OS=Rattus norvegicu... [more]
ABCB8_HUMAN1.375e-2157.95ATP-binding cassette sub-family B member 8, mitoch... [more]
AB15B_ARATH1.375e-2150.00ABC transporter B family member 15 OS=Arabidopsis ... [more]
MDR3_HUMAN1.795e-2159.09Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
ABCBA_HUMAN2.345e-2154.44ATP-binding cassette sub-family B member 10, mitoc... [more]
ABCB8_PONAB2.345e-2157.95ATP-binding cassette sub-family B member 8, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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