FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPA (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I VI+DG++ E G H+ LL     G YA++ ++Q
Sbjct:  494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAEIN (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus influenzae GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + +++LDEATSALD ESER++Q AL+     +T +V+AHRLSTI NA  I VID G++ E G+H  LL+ N  G Y ++  +Q
Sbjct:  499 ALLRNSPVLILDEATSALDTESERAIQSALEELKKDRTVVVIAHRLSTIENADEILVIDHGEIRERGNHKTLLEQN--GAYKQLHSMQ 584          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR49_DROME (Multidrug resistance protein homolog 49 OS=Drosophila melanogaster GN=Mdr49 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A VR+ +++LLDEATSALD  SE+ VQ AL+ A  G TT+VVAHRLSTI NA  I  + DG VAE G+H  L++    G Y  ++ +
Sbjct:  554 ALVRQPQVLLLDEATSALDPTSEKRVQSALELASQGPTTLVVAHRLSTITNADKIVFLKDGVVAEQGTHEELMERR--GLYCELVSI 638          

HSP 2 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A VR  +I++LDEATSALD ESE+ VQ+ALD A SG+T + +AHRL+T+RNA +I V+  G V E G+H  L+  N    YA +  +Q+
Sbjct: 1213 ALVRNPKILILDEATSALDLESEKVVQQALDEARSGRTCLTIAHRLTTVRNADLICVLKRGVVVEHGTHDELMALNK--IYANLYLMQQ 1299          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: LKTB_PASSP (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica-like sp. (strain 5943B) GN=lktB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  + + + + C G+T I++AHRLST++NA  I V++ G++ E G H+ LL+NN +G Y+ + QLQ
Sbjct:  620 ALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVEQGKHNELLQNN-NGLYSYLHQLQ 706          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEEREA 349
            A VR   +++LDEATSALDAESE  +Q+A+       T +++AHRLST+  AH+I V+D G+V + G+H  LL     G YA+++Q Q       +  T+G      P  + E +A
Sbjct:  652 ALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQG--GLYAKLVQRQMLGLEHPLDYTAGHK---EPPSNTEHKA 762          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB6_XENTR (ATP-binding cassette sub-family B member 6, mitochondrial OS=Xenopus tropicalis GN=abcb6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKD 331
            ++  +I+LLDEATSALD E+ER++Q +L + C+ +TTIVVAHRLST+ N+  I V+ +G++ E G H  LL     G YA M Q Q+       G  S S S +  KD
Sbjct:  733 LKAPQIILLDEATSALDTETERNIQASLAKVCANRTTIVVAHRLSTVINSDQILVLKEGQIVERGRHEELLLKG--GVYAGMWQKQQ------SGSESSSDSDSERKD 832          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB6_RAT (ATP-binding cassette sub-family B member 6, mitochondrial OS=Rattus norvegicus GN=Abcb6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            ++  +I+LLDEATSALD  +ER++Q +L + C+ +TTIVVAHRLST+ NA  I VI DG + E G H  LL     G YA M QLQ+
Sbjct:  742 LKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVVAHRLSTVVNADQILVIKDGCIIERGRHEALLSRG--GVYAEMWQLQQ 826          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALPA (Lipid A export ATP-binding/permease protein msbA OS=Salmonella paratyphi A GN=msbA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++++AHRLSTI  A  I V++DG + E G+HS LL  +  G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLMIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_DECAR (Lipid A export ATP-binding/permease protein msbA OS=Dechloromonas aromatica (strain RCB) GN=msbA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++ A I++LDEATSALD ESER VQ ALD    G++T+V+AHRLSTI  A  I  +  G   E GSH+ LL +  DG YAR+ ++Q+
Sbjct:  493 AILKDAPILILDEATSALDTESERHVQAALDELMRGRSTLVIAHRLSTIERADRIIALAHGHKQEEGSHAELLAH--DGLYARLYRMQK 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_CHRVO (Lipid A export ATP-binding/permease protein msbA OS=Chromobacterium violaceum GN=msbA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEATSALD +SER VQ AL+     +TTIV+AHRLSTI NA  I V+  G++AE G H  LL+    G YAR+  LQ
Sbjct:  492 ALLKNAPLLILDEATSALDTQSERLVQAALENLMKNRTTIVIAHRLSTIENADRIVVMHQGRLAEQGRHQALLEQG--GLYARLHSLQ 577          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_YERPA7.805e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAEIN7.805e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MDR49_DROME7.805e-1751.72Multidrug resistance protein homolog 49 OS=Drosoph... [more]
LKTB_PASSP7.805e-1746.59Leukotoxin translocation ATP-binding protein lktB ... [more]
ABCB9_RAT7.805e-1739.66ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
ABCB6_XENTR7.805e-1745.37ATP-binding cassette sub-family B member 6, mitoch... [more]
ABCB6_RAT7.805e-1752.87ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_SALPA1.019e-1648.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_DECAR1.019e-1651.69Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_CHRVO1.019e-1652.27Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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