FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB9_HUMAN (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSG 304
            A VR   +++LDEATSALDAESE  +Q+A+       T +++AHRLST+ +AH+I V+D G+V + G+H  LL     G YA+++Q Q          T+G
Sbjct:  656 ALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQG--GLYAKLVQRQMLGLQPAADFTAG 754          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB6_MOUSE (ATP-binding cassette sub-family B member 6, mitochondrial OS=Mus musculus GN=Abcb6 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            ++  +I+LLDEATSALD  +ER++Q +L + C+ +TTIV+AHRLST+ NA  I VI DG + E G H  LL     G YA M QLQ+
Sbjct:  742 LKAPDIILLDEATSALDTSNERAIQASLAKVCTNRTTIVIAHRLSTVVNADQILVIKDGCIIERGRHEALLSRG--GVYAEMWQLQQ 826          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A ++ A I+LLDEATSALD ESER VQ+AL+R    +T I+VAHRL+TI  A  I V+DDGK+ E G+H  L+  N
Sbjct:  527 AILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQN 602          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMA (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup A GN=msbA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A ++ A I+LLDEATSALD ESER VQ+AL+R    +T I+VAHRL+TI  A  I V+DDGK+ E G+H  L+  N
Sbjct:  527 AILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQN 602          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_DESPS (Lipid A export ATP-binding/permease protein msbA OS=Desulfotalea psychrophila GN=msbA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223
            A +  A I++LDEATSALD ESER VQ+AL+     +TT V+AHRLSTI+NA  I V+  GK+ E GSH  LLK
Sbjct:  487 ALLADAPILILDEATSALDTESEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVEEGSHEELLK 560          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFT (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msbA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEAT+ALD ESER VQ+AL R    +TT+V+AHRLSTI++A  + V+D G++ E G+H  LL    DG YA +  +Q
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLAR--DGLYAYLYSMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XYLFA (Lipid A export ATP-binding/permease protein msbA OS=Xylella fastidiosa GN=msbA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEAT+ALD ESER VQ+AL R    +TT+V+AHRLSTI++A  + V+D G++ E G+H  LL    DG YA +  +Q
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALQRLMPERTTLVIAHRLSTIKHADQVLVMDQGRIIESGTHVDLLAR--DGLYAYLYSMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SODGM (Lipid A export ATP-binding/permease protein msbA OS=Sodalis glossinidius (strain morsitans) GN=msbA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALD ESER++Q+ALD     +T++V+AHRLSTI  A  I V+ +G++ E G+H  L+     G YA++ QLQ
Sbjct:  494 ALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELMSR--QGVYAQLHQLQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB9_MOUSE (ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEEREA 349
            A VR   +++LDEATSALDAESE  +Q+A+       T +++AHRLST+  AH+I V+D G+V + G+H  LL     G YA+++Q Q       +  T   +S   P  + E +A
Sbjct:  652 ALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQG--GLYAKLVQRQMLGLEHPLDYT---ASHKEPPSNTEHKA 762          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD+ESER VQ AL+     +TT+V+AHRLSTI  A+ I V++ G++ E G+H+ LL     G YA++  LQ
Sbjct:  491 AILKNAPILILDEATSALDSESERHVQAALETLMQNRTTLVIAHRLSTIERANRIVVLEGGRIVETGAHADLLAK--QGRYAQLHALQ 576          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ABCB9_HUMAN1.019e-1642.57ATP-binding cassette sub-family B member 9 OS=Homo... [more]
ABCB6_MOUSE1.019e-1651.72ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_NEIMB1.331e-1656.58Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIMA1.331e-1656.58Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_DESPS1.331e-1658.11Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XYLFT1.739e-1650.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XYLFA1.739e-1650.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SODGM1.739e-1648.86Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB9_MOUSE1.739e-1639.66ATP-binding cassette sub-family B member 9 OS=Mus ... [more]
MSBA_THIDA2.271e-1650.00Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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