FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_FRATT (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis GN=msbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A +++ DEATSALD ESER VQ+AL+      TTIV+AHRLST+ NA  I V+D G+V E G H  LL+    G Y R+ Q
Sbjct:  522 ALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQG--GLYTRLYQ 605          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_FRAT1 (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A +++ DEATSALD ESER VQ+AL+      TTIV+AHRLST+ NA  I V+D G+V E G H  LL+    G Y R+ Q
Sbjct:  522 ALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGRVVESGKHQELLEQG--GLYTRLYQ 605          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB6_HUMAN (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            I+LLDEATSALD  +ER++Q +L + C+ +TTIVVAHRLST+ NA  I VI DG + E G H  LL     G YA M QLQ+
Sbjct:  747 IILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG--GVYADMWQLQQ 826          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSYCK (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter cryohalolentis (strain K5) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A I++LDEATSALD ESE  +Q+ALD     +TT+V+AHRL+TI +A  IAV+D G++ ELG+H+ L++ +  G YA+M
Sbjct:  511 ALLKDAPILILDEATSALDNESEYYIQKALDNIMKNRTTLVIAHRLTTIESADRIAVLDGGQIVELGTHTQLMQLH--GHYAQM 592          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSYA2 (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A I++LDEATSALD ESE  +Q+ALD     +TT+V+AHRL+TI +A  IAV+D G++ ELG+H+ L++ +  G YA+M
Sbjct:  508 ALLKDAPILILDEATSALDNESEYYIQKALDNIMRNRTTLVIAHRLTTIESADRIAVLDGGRIVELGTHAELMQLH--GHYAQM 589          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_METCA (Lipid A export ATP-binding/permease protein msbA OS=Methylococcus capsulatus GN=msbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 286
            A ++ A I++LDEATSALDAESER VQ+AL+     +TT+V+AHRLSTI+NA  I V+  G++ E G+H+ L+     G YA +  +Q F +S V
Sbjct:  499 ALLKNAPILILDEATSALDAESERYVQQALEVLMQNRTTLVIAHRLSTIQNADQICVMRGGRIIECGTHAQLMAAR--GGYADLYAMQ-FGYSSV 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEA6 (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=msbA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +  A +++LDEATSALD ESER +Q+AL+     +T+IVVAHRLSTI +A  I VI+ G++ E G H+ LL  + DG YA++ +LQ
Sbjct:  492 AVLLDAPVLILDEATSALDTESERLIQDALETLQQDRTSIVVAHRLSTIESADQILVIERGRILEQGDHASLL--SEDGAYAQLHKLQ 577          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_IDILO (Lipid A export ATP-binding/permease protein msbA OS=Idiomarina loihiensis GN=msbA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD ESER +Q+AL      +T IV+AHRLSTI NA  I V+D+G++ E G+H  LL  + +G Y ++  LQ
Sbjct:  492 ALLQDAPILILDEATSALDTESERHIQDALGTLRKNRTAIVIAHRLSTIENADEILVMDNGEIIERGTHQQLL--DQEGAYFQLHNLQ 577          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HLYB_ECOL6 (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli O6 GN=hlyB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ GK+ E G H  LL + P+  Y+ + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQLQ 705          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HLYBP_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ GK+ E G H  LL + P+  Y+ + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQLQ 705          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_FRATT2.271e-1651.16Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRAT12.271e-1651.16Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB6_HUMAN2.271e-1656.10ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_PSYCK2.966e-1651.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSYA22.966e-1651.19Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_METCA2.966e-1649.47Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEA63.874e-1651.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_IDILO3.874e-1650.00Lipid A export ATP-binding/permease protein msbA O... [more]
HLYB_ECOL63.874e-1645.45Alpha-hemolysin translocation ATP-binding protein ... [more]
HLYBP_ECOLX3.874e-1645.45Alpha-hemolysin translocation ATP-binding protein ... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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