FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y4GM_RHISN (Uncharacterized ABC transporter ATP-binding protein y4gM OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.472e-15
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R AEI++ DEATSALD+ESE  +++AL R    +TTI++AHRLST+  A  I V++ G+VAE G    LL  + DG Y R+ +LQ
Sbjct:  496 AMLRNAEILIFDEATSALDSESEIQIRQALARLTRKRTTIMIAHRLSTVTAADNIVVMEGGQVAEQGPQGRLL--SQDGVYRRLYELQ 581          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: RTX3B_ACTPL (Toxin RTX-III translocation ATP-binding protein OS=Actinobacillus pleuropneumoniae GN=apxIIIB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.472e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V    I++ DEATSALD ESE  + + + + C G+T I++AHRLST++NA  I V++ G + E G H+ LL+N  +G Y  + QLQ
Sbjct:  623 ALVNNPRILIFDEATSALDYESEHIIMQNMQKICHGRTVIIIAHRLSTVKNADRIIVMEKGHIVEQGKHNQLLENE-NGLYYYLNQLQ 709          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_FRANO (Lipid A export ATP-binding/permease protein msbA OS=Francisella novicida GN=msbA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.472e-15
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223
            A ++ A +++ DEATSALD ESER VQ+AL+      TTIV+AHRLST+ NA  I V+D GKV E G H  LL+
Sbjct:  501 ALLKNAPVLIFDEATSALDNESERVVQQALESLTESCTTIVIAHRLSTVENADKIVVMDGGKVVESGKHQELLE 574          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: RTX1B_ACTPL (Toxin RTX-I translocation ATP-binding protein OS=Actinobacillus pleuropneumoniae GN=apxIB PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ G++ E G H  LL  +P+G Y  + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHIIMRNMHQICKGRTVIIIAHRLSTVKNADRIIVMEKGQIVEQGKHKELLA-DPNGLYHYLHQLQ 705          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_POLSJ (Lipid A export ATP-binding/permease protein msbA OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=msbA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 41/87 (47.13%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A  + A I++LDEATSALD ESE +VQEA+ R  + +T++V+AHRLST+++A  I +++ G++ E G+H+ LL  N  G YA + +L
Sbjct:  500 ALYKNAPILVLDEATSALDTESELAVQEAIKRLTASRTSLVIAHRLSTVQHADRIIMMEAGRMIESGTHAELLARN--GAYAHLYRL 584          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_NEIG1 (Lipid A export ATP-binding/permease protein msbA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=msbA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A ++ A I+LLDEATSALD ESER VQ+AL+R    +T I+VAHRL+T+ +A  I V+D GK+ E G+H  L+  N
Sbjct:  527 AILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTVESADRIIVMDGGKIIEQGTHDQLMFQN 602          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HLYB_ECO57 (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli O157:H7 GN=hlyB PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V    I++ DEATSALD ESE  + + + R C  +T I++AHRLST++NA+ I V+D+G ++E G+H  L+ +  D  YA + QLQ
Sbjct:  619 ALVTNPRILIFDEATSALDYESENIIMKNMSRICKNRTVIIIAHRLSTVKNANRIIVMDNGFISEDGTHKELI-SKKDSLYAYLYQLQ 705          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_NITWN (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ndvA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.279e-15
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSS 316
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIRNA  I V  DG+V E G+   LL N   G +A++ + Q  T        S S ++
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNAARILVFADGRVIESGTFGELLANG--GHFAQLAKAQFMTQESTQADLSSSRTN 597          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAES1 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus somnus (strain 129Pt) GN=msbA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.279e-15
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTH 277
            A +R + +++LDEATSALD ESER++Q AL+     +T +V+AHRLSTI  A  I VI+ G++ E GSH  LL  N  G Y ++   Q F H
Sbjct:  494 ALLRDSPVLILDEATSALDTESERAIQAALETLQKDRTVLVIAHRLSTIEKADEILVIEQGEIKERGSHQELLALN--GAYKQLHSTQ-FNH 582          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_NITOC (Lipid A export ATP-binding/permease protein msbA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=msbA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS 280
            A ++ A I++LDEAT++LD E+ER +Q AL+     +TT+V+AHRLST+ NA  I V+  G++ E G+HS LL    +  YA + +LQ F HS
Sbjct:  495 ALLKDAPILILDEATASLDTEAERHIQAALETLMRQRTTLVIAHRLSTVENADQIIVLHQGQIIERGTHSQLLAR--ESHYAGLYRLQ-FRHS 584          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y4GM_RHISN1.472e-1550.00Uncharacterized ABC transporter ATP-binding protei... [more]
RTX3B_ACTPL1.472e-1545.45Toxin RTX-III translocation ATP-binding protein OS... [more]
MSBA_FRANO1.472e-1555.41Lipid A export ATP-binding/permease protein msbA O... [more]
RTX1B_ACTPL1.923e-1545.45Toxin RTX-I translocation ATP-binding protein OS=A... [more]
MSBA_POLSJ1.923e-1547.13Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NEIG11.923e-1553.95Lipid A export ATP-binding/permease protein msbA O... [more]
HLYB_ECO571.923e-1545.45Alpha-hemolysin translocation ATP-binding protein ... [more]
NDVA_NITWN3.279e-1544.76Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_HAES13.279e-1547.83Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_NITOC4.283e-1546.24Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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