FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HLYB_PROVU (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Proteus vulgaris GN=hlyB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ G++ E G H  LL ++P+  Y  + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICQGRTVIIIAHRLSTVKNADRIIVMEKGQIIEQGKHKELL-SDPESLYHYLHQLQ 705          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: CYAB_BORPE (Cyclolysin secretion/processing ATP-binding protein cyaB OS=Bordetella pertussis GN=cyaB PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A + +  +++LDEATSALD ESE  +Q  +   C G+T I++AHRLS +R A  I V++ G+VAE GSH  LL     G YAR+  LQ
Sbjct:  622 ALIHRPRVLILDEATSALDYESEHIIQRNMRDICDGRTVIIIAHRLSAVRCADRIVVMEGGEVAECGSHETLLA--AGGLYARLQALQ 707          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANOR (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae GN=msbA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL     G Y+ +  +Q
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQG--GLYSHLHGMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANOM (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msbA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL     G Y+ +  +Q
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHELLAQG--GLYSHLHGMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: LMRA_LACLA (Multidrug resistance ABC transporter ATP-binding and permease protein OS=Lactococcus lactis subsp. lactis GN=lmrA PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.594e-15
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            AF+R  +I++LDEAT++LD+ESE  VQ+ALD    G+TT+V+AHRLSTI +A  I  I+ G++   G H+ L+  +P   YA+ +  Q
Sbjct:  500 AFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP--LYAKYVSEQ 585          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y2003_STAA8 (Putative multidrug export ATP-binding/permease protein SAOUHSC_02003 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02003 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1956_STAAR (Putative multidrug export ATP-binding/permease protein SAR1956 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1956 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1924_STAAC (Putative multidrug export ATP-binding/permease protein SACOL1924 OS=Staphylococcus aureus (strain COL) GN=SACOL1924 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1866_STAAM (Putative multidrug export ATP-binding/permease protein SAV1866 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1866 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1847_STAA3 (Putative multidrug export ATP-binding/permease protein SAUSA300_1847 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1847 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
HLYB_PROVU4.283e-1544.32Alpha-hemolysin translocation ATP-binding protein ... [more]
CYAB_BORPE4.283e-1547.73Cyclolysin secretion/processing ATP-binding protei... [more]
MSBA_XANOR5.594e-1546.59Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANOM5.594e-1546.59Lipid A export ATP-binding/permease protein msbA O... [more]
LMRA_LACLA5.594e-1546.59Multidrug resistance ABC transporter ATP-binding a... [more]
Y2003_STAA87.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1956_STAAR7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1924_STAAC7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1866_STAAM7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1847_STAA37.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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