FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1806_STAAW (Putative multidrug export ATP-binding/permease protein MW1806 OS=Staphylococcus aureus (strain MW2) GN=MW1806 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1799_STAAB (Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1799c PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1788_STAAS (Putative multidrug export ATP-binding/permease protein SAS1788 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1788 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1683_STAAN (Putative multidrug export ATP-binding/permease protein SA1683 OS=Staphylococcus aureus (strain N315) GN=SA1683 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F+    I++LDEATSALD ESE  +QEALD     +TT++VAHRLSTI +A  I VI++G + E G+H  L+     G Y  +  +Q
Sbjct:  492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHLYSIQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANC5 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msbA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL     G Y+ +  +Q
Sbjct:  498 AMLKDAPVLILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQG--GLYSHLHGMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANAC (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas axonopodis pv. citri GN=msbA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL     G Y+ +  +Q
Sbjct:  498 AMLKDAPVLILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHHQLLAQG--GLYSHLHGMQ 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: LMRA_LACLM (Multidrug resistance ABC transporter ATP-binding and permease protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=lmrA PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            AF+R  +I++LDEAT++LD+ESE  VQ ALD    G+TT+V+AHRLSTI +A  I  I+ G++   G H+ L+  +P   YA+ +  Q
Sbjct:  500 AFLRNPKILMLDEATASLDSESESMVQRALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGEITGSGKHNELVATHP--LYAKYVSEQ 585          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: LKTB_AGGAC (Leukotoxin translocation ATP-binding protein lktB OS=Aggregatibacter actinomycetemcomitans GN=lktB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V    I++ DEATSALD ESE  +   + + C  +T +++AHRLST++NA  I V+D G++ E G H  LLK+   G Y+ + QLQ
Sbjct:  619 ALVNNPRILIFDEATSALDYESENIIMHNMHKICQNRTVLIIAHRLSTVKNADRIIVMDKGEIIEQGKHQELLKDE-KGLYSYLHQLQ 705          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB20B_ARATH (ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-15
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274
            I+LLDE T  LD E+ER VQEALD    G++TI++A RLS I+NA  IAV+++G++ E+G+H  L+  N  G YA +++ +  T
Sbjct:  572 ILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELI--NLGGLYAELLKCEEAT 653          

HSP 2 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSG-KTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            ++ A I+L+DEA+S++++ES R VQEALD    G KTTI++AHR + +R+   I V++ G++ E G+H  L   N  G Y R++Q
Sbjct: 1313 LKNAPIILIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKN--GLYVRLMQ 1395          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YHEH_BACSU (Probable multidrug resistance ABC transporter ATP-binding/permease protein yheH OS=Bacillus subtilis GN=yheH PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            I++LDEAT+ +D E+E  +Q+ALD    G+TT V+AHRLSTIRNA  I V+D G++ E G+H  L+    +G Y +M +LQ+
Sbjct:  587 ILILDEATAHIDTETEAVIQKALDVVKQGRTTFVIAHRLSTIRNADQILVLDKGEIVERGNHEELMA--LEGQYYQMYELQK 666          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y1806_STAAW7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1799_STAAB7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1788_STAAS7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
Y1683_STAAN7.306e-1547.13Putative multidrug export ATP-binding/permease pro... [more]
MSBA_XANC57.306e-1545.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANAC7.306e-1545.45Lipid A export ATP-binding/permease protein msbA O... [more]
LMRA_LACLM7.306e-1546.59Multidrug resistance ABC transporter ATP-binding a... [more]
LKTB_AGGAC7.306e-1544.32Leukotoxin translocation ATP-binding protein lktB ... [more]
AB20B_ARATH7.306e-1547.62ABC transporter B family member 20 OS=Arabidopsis ... [more]
YHEH_BACSU9.541e-1548.78Probable multidrug resistance ABC transporter ATP-... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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