FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++LLDEATSALDAESE  +QEAL+R   G+TT+VVAHRLSTIR    I VI DG++ E GSHS L+ + P+G Y+R++QLQ
Sbjct: 1162 AVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELV-SRPEGAYSRLLQLQ 1248          

HSP 2 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 322
            A ++  +I+LLDEATSALDA SE  VQEALDR   G+TT+VVAHRL TIRN   IAVI  G+V E G+H  L+  +  G YA +I+ Q     +++G    S+ S R
Sbjct:  517 AMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKS--GAYASLIRFQ-----EMVGTRDFSNPSTR 616          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++LLDEATSALD+ESER VQEALD A  G+TTIV+AHRLSTIRN  VI V  +G++ E GSH  L++ N DG Y  +++LQ
Sbjct:  531 AIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRLSTIRNVDVICVFKNGQIVETGSHEELME-NVDGQYTSLVRLQ 617          

HSP 2 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++   ++LLDEATSALD +SER VQ+AL R   G+T++V+AHRLSTI+N   I V+D GKV E G+HS LL   P G Y  ++ LQR
Sbjct: 1171 AVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQR 1259          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ-----VIGMTSGSSSSAR 322
            A ++   I+LLDEATSALD ESER VQEALD A  G+TTIV+AHRLSTIRNA +I V+ +G + E GSH  L++   DG Y  +++LQ+  + +      +G+  G  SS R
Sbjct:  498 ALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGSHDKLME--IDGKYTSLVRLQQMKNEESCDNTSVGVKEGRVSSLR 607          

HSP 2 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            ++   I+LLDEATSALD++SER VQ+AL+    GKT++V+AHRLSTI+N   IAV+D GKV E G+H+ LL   P G Y  ++ LQR
Sbjct: 1137 LKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQR 1223          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR3_CRIGR (Multidrug resistance protein 3 OS=Cricetulus griseus GN=PGY3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  +DG + E GSHS L++   +G Y +++ +Q
Sbjct:  546 ALVRNPKILLLDEATSALDTESEAEVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMQK--EGVYFKLVNMQ 631          

HSP 2 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R+  ++LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI +GKV E G+H  LL     G Y  M+ +Q
Sbjct: 1190 ALIRQPRVLLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVNIQ 1275          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSS 316
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  D G + E G+H  L+K    G Y R++ +Q   +   +G  +  S S
Sbjct:  543 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEK--GIYCRLVMMQTRGNEVELGSEADGSQS 645          

HSP 2 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI +GKV E G+H  LL     G Y  M+Q
Sbjct: 1187 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVQ 1270          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            A ++  +I+LLDEATSALDAE+E  VQEALDR   G+T +++AHRLSTI+NA+ +AV+D GK+ E G+H  LL   P+G Y +++  Q F
Sbjct:  612 ALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICEHGTHEELLL-KPNGLYRKLMNKQSF 700          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB9B_ARATH (ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPK 328
            A ++  +I+LLDEATSALDAESER VQ+AL    S +TT+VVAHRL+TIR A VIAV+  GK+ E G+H  +++ +P+G Y+++++LQ        G    ++ S RP+
Sbjct:  507 AILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQ-DPEGAYSQLVRLQE-------GSKEEATESERPE 607          

HSP 2 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++  +I+LLDEATSALDAESER VQ+ALDR    +TT+VVAHRL+TI+NA VIAV+ +G +AE G H  L
Sbjct: 1188 AILKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAEKGRHETL 1259          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A +R   I+LLDEATSALD ESE  +Q ALD+  +G+TT+VVAH+LST+R A++IA++++G V ELGSH  L+  N    YA++++LQR
Sbjct:  512 AIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAHKLSTVRGANIIAMLENGSVRELGSHEDLMTKN--NHYAKLVKLQR 598          

HSP 2 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK--TTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            AF+R   I+LLDE TS+LD+ SE+ VQ+AL R  + +  TT+VVAHRL+T++N   IA+I DG V E GS+ HL   N  G ++R+
Sbjct: 1150 AFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMTTVVVAHRLNTLKNLDCIALIVDGTVIETGSYDHL--KNIGGQFSRL 1233          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR65_DROME (Multidrug resistance protein homolog 65 OS=Drosophila melanogaster GN=Mdr65 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A VR  +I+LLDEATSALD +SE+ VQ+ALD ACSG+T IV+AHRLST++NA VI VI +G+V E G+H  L+     G YA++ + Q+
Sbjct: 1214 ALVRNPKILLLDEATSALDLQSEQLVQQALDTACSGRTCIVIAHRLSTVQNADVICVIQNGQVVEQGNHMQLISQG--GIYAKLHKTQK 1300          

HSP 2 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++  +I+LLDEATSALD +SE+ VQ+ALD A  G+TTIVV+HRLS IR A  I  I DGKV E GSH  L+    +G Y  M++
Sbjct:  557 ALIQNPKILLLDEATSALDYQSEKQVQQALDLASKGRTTIVVSHRLSAIRGADKIVFIHDGKVLEEGSHDDLMA--LEGAYYNMVR 640          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_HUMAN (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  DDG + E G+H  L+K    G Y +++ +Q
Sbjct:  544 ALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEK--GIYFKLVTMQ 629          

HSP 2 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 283
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I V  +G+V E G+H  LL     G Y  M+ +Q  T  Q
Sbjct: 1189 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQK--GIYFSMVSVQAGTKRQ 1280          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
AB19B_ARATH2.345e-2157.95ABC transporter B family member 19 OS=Arabidopsis ... [more]
AB22B_ARATH3.062e-2157.95ABC transporter B family member 22 OS=Arabidopsis ... [more]
AB16B_ARATH3.999e-2150.00ABC transporter B family member 16 OS=Arabidopsis ... [more]
MDR3_CRIGR5.223e-2157.95Multidrug resistance protein 3 OS=Cricetulus grise... [more]
MDR2_CRIGR5.223e-2151.43Multidrug resistance protein 2 OS=Cricetulus grise... [more]
ABCBA_MOUSE1.164e-2053.33ATP-binding cassette sub-family B member 10, mitoc... [more]
AB9B_ARATH1.164e-2047.71ABC transporter B family member 9 OS=Arabidopsis t... [more]
AB8B_ARATH1.520e-2053.93Putative ABC transporter B family member 8 OS=Arab... [more]
MDR65_DROME1.985e-2056.18Multidrug resistance protein homolog 65 OS=Drosoph... [more]
MDR1_HUMAN1.985e-2057.95Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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