FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y288_THEMA (Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima GN=TM_0288 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 34/74 (45.95%), Postives = 57/74 (77.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223
            AF+   +I++LDEATS +D ++E+S+Q A+ +   GKT+I++AHRL+TI+NA +I V+ DG++ E+G H  L++
Sbjct:  505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANCP (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris GN=msbA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A I++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELL 570          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_XANC8 (Lipid A export ATP-binding/permease protein msbA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msbA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A I++LDEAT+ALD ESER VQ+AL +    +TT+V+AHRLSTI +A  + V+D G++ E G+H  LL
Sbjct:  498 AMLKDAPILILDEATAALDNESERLVQDALHKLMPDRTTLVIAHRLSTIEHADQVLVMDQGRIVERGTHQELL 570          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA1_COLP3 (Lipid A export ATP-binding/permease protein msbA 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.541e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   26 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            ++LDEATSALD ESER +Q+AL      +T+IV+AHRLSTI NA  I V++ GK+ E G+H  LL     G YA++   Q
Sbjct:  523 LILDEATSALDTESERHIQDALQTLQQNRTSIVIAHRLSTIENADKIIVMEQGKIVEQGNHQSLLAK--QGAYAQLHSFQ 600          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YGAD_BACSU (Putative multidrug export ATP-binding/permease protein ygaD OS=Bacillus subtilis GN=ygaD PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            F++   +++LDEATSALD ESE  +QEA+D+    +TT VVAHRLSTI +A  I V+++G + E+G+H  L+
Sbjct:  493 FLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELM 564          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BARBK (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ndvA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 283
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLSTIRNA ++  +D G++ E GS   L+  N DG + ++++    T +Q
Sbjct:  485 AILKNAPILILDEATSALDVETEIRVKNAIDCISQNRTTFIIAHRLSTIRNADLVLFLDQGRLIEKGSFQELI--NKDGHFYKLLKAGGLTINQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_THICR (Lipid A export ATP-binding/permease protein msbA OS=Thiomicrospira crunogena (strain XCL-2) GN=msbA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            AF++ A I+++DEATSALD +SE+ +QEA++     +T I++AHRLSTI NA  I V+++G + E G+H+ L+  N
Sbjct:  490 AFLKNAPILIMDEATSALDNQSEKLIQEAMNSLRKNRTVIIIAHRLSTIENADKIVVLEEGSLKEQGTHAELMALN 565          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_COXBU (Lipid A export ATP-binding/permease protein msbA OS=Coxiella burnetii GN=msbA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I +LDEATS+LD  SER +Q ALD      TT+V+AHRLSTI  A  I V+++G++ E G+H  LL  N  G YA + ++Q
Sbjct:  491 ALFKNAPIHILDEATSSLDTHSERHIQAALDNLMDQCTTLVIAHRLSTIERADWIMVLEEGRLIEKGTHQQLLTLN--GAYAELYRMQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_NITHX (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ndvA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.628e-14
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIRNA  I V ++G+V E G+   LL     G +AR+ + Q  T
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNATRILVFENGRVIENGTFDELLARG--GHFARLAKAQFMT 583          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BARBA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella bacilliformis GN=ndvA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.628e-14
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 283
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLSTIRNA ++  +D G++ E GS   L+  N DG + ++++    T +Q
Sbjct:  485 AILKNAPILILDEATSALDVETEIRVKNAIDCISQNRTTFIIAHRLSTIRNADLVLFLDQGRLIEKGSFQELI--NKDGHFYKLLKRGGLTINQ 576          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y288_THEMA9.541e-1545.95Uncharacterized ABC transporter ATP-binding protei... [more]
MSBA_XANCP9.541e-1552.05Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_XANC89.541e-1552.05Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA1_COLP39.541e-1551.25Lipid A export ATP-binding/permease protein msbA 1... [more]
YGAD_BACSU1.246e-1450.00Putative multidrug export ATP-binding/permease pro... [more]
NDVA_BARBK1.246e-1442.55Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_THICR1.246e-1447.37Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_COXBU1.246e-1447.73Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_NITHX1.628e-1448.35Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARBA1.628e-1442.55Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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