FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1051_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1051 OS=Haemophilus influenzae GN=HI1051 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            ++ A I+LLDEATSALD+E E ++QE+LD+    KT I +AHRLSTI     + V+D G++ E G+H+ LL+ N  G YA++
Sbjct:  521 LKDAPILLLDEATSALDSEVEVAIQESLDKMMENKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHAELLELN--GLYAKL 600          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB6B_ARATH (ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274
            I+LLDE T  LD E+ER VQEALD    G++TI++A RLS IRNA  IAV+++G++ E+G+H  L+  N    YA +++ +  T
Sbjct:  570 ILLLDEVTGGLDFEAERVVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLLEMGTHDELI--NLGNLYAELLKCEEAT 651          

HSP 2 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSG-KTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            ++ A I+L+DEA+S++++ES R VQEALD    G KTTI++AHR++ +R+   I V++ GK+ E G+H  L   N  G Y R++Q
Sbjct: 1312 LKNAPILLIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRVAMMRHVDNIVVLNGGKIVEEGTHDCLAGKN--GLYVRLMQ 1394          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisA53) GN=ndvA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.776e-14
Identity = 50/113 (44.25%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEE 340
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIR+A  I V D+G+V E GS   LL        AR        H+Q   M   S+ SA P    E
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGRVIESGSFDELL--------ARRGYFAELAHAQF--MVQDSARSAMPAAQPE 597          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB26B_ARATH (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.776e-14
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEAL----DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALDAESE +V+  L    + + + ++ IV+AHRLSTI+ A  I  +D G+V E+GSH  LL  + DG YAR+ + Q
Sbjct:  606 AILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELL--SKDGLYARLTKRQ 695          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YWJA_BACSU (Uncharacterized ABC transporter ATP-binding protein ywjA OS=Bacillus subtilis GN=ywjA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.626e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            F++   I++LDEATSALD E+E ++Q+AL     G+TT+V+AHRL+TI++A  I V+ +  + E G H  L++    G Y+R+ Q Q
Sbjct:  484 FLKNPSILILDEATSALDTETEAAIQKALQELSEGRTTLVIAHRLATIKDADRIVVVTNNGIEEQGRHQDLIE--AGGLYSRLHQAQ 568          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB6_DICDI (ABC transporter B family member 6 OS=Dictyostelium discoideum GN=abcB6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 286
            A ++   I++LDEA+S+LD  +ER +Q+A++    G+TT+V+AHRLSTI +   I V+  G + E GSHS+LL  N D  YA +   Q+ + S +
Sbjct:  576 ALLKDPPILILDEASSSLDTFTERKIQQAINEVSKGRTTLVIAHRLSTIIHCDEILVLKGGHIVERGSHSYLLDFNGD--YAHLWNQQQLSASDL 668          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHIL3 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ndvA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLST+R A ++  +DDG+V E GS   L  +N  G +A +++
Sbjct:  485 AILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGSFDELSHSN--GRFAALLR 568          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: TAGA_DICDI (Serine protease/ABC transporter B family protein tagA OS=Dictyostelium discoideum GN=tagA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEER 343
            ++   ++LLDE TS LD ESE+ VQ+++D+   G+T I+VAHRL+TI  A +IAV+ D  ++E+G+   LL     G +   +Q+Q     + + +   S+S      D+ R
Sbjct: 1528 IKNPTVLLLDETTSELDVESEKLVQDSIDKLVVGRTVIIVAHRLTTILTADIIAVVSDSTISEMGTPEELLAKK--GMFYDFVQIQYGKQGEELDIQLPSNSRNTRNADKLR 1637          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223
            A +R  EI++LDEATSALD+ SER +QE++++   G+T I +AHRLSTI  A  + V++ G++ E G++  LL+
Sbjct:  514 ALLRDPEILILDEATSALDSVSERLIQESIEKLSVGRTVIAIAHRLSTIAKADKVVVMEQGRIVEQGNYQELLE 587          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BRAJA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bradyrhizobium japonicum GN=ndvA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.055e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSA 319
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRL+TIRNA  I V ++G+V E G+   L+     G +A + + Q     Q    T  S ++A
Sbjct:  489 ALLKDPPILILDEATSALDAVTEVKVNAALDEVMRGRTTFVIAHRLATIRNATRILVFENGRVTESGTFDELVAKG--GHFAELARAQFMVQEQSRANTRASVTAA 592          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
Y1051_HAEIN2.126e-1448.78Uncharacterized ABC transporter ATP-binding protei... [more]
AB6B_ARATH2.126e-1447.62ABC transporter B family member 6 OS=Arabidopsis t... [more]
NDVA_RHOP52.776e-1444.25Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
AB26B_ARATH2.776e-1447.83ABC transporter B family member 26, chloroplastic ... [more]
YWJA_BACSU3.626e-1443.68Uncharacterized ABC transporter ATP-binding protei... [more]
ABCB6_DICDI4.735e-1442.11ABC transporter B family member 6 OS=Dictyostelium... [more]
NDVA_RHIL36.185e-1444.19Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
TAGA_DICDI8.077e-1435.71Serine protease/ABC transporter B family protein t... [more]
HEPA_ANASP8.077e-1447.30Heterocyst differentiation ATP-binding protein hep... [more]
NDVA_BRAJA1.055e-1341.51Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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