FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris GN=ndvA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.378e-13
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I++LDEATSALDA +E  +  ALD    G+TT V+AHRLSTIR+A  I V D+GKV E G+   L+     G +A++ + Q
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKLNLALDEVMKGRTTFVIAHRLSTIRDATRILVFDNGKVIESGTFDELVARG--GAFAQLARAQ 580          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPS (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB5) GN=ndvA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.799e-13
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIR+A  I V D+GKV E G+   L+     G +A + + Q
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGKVIESGTFDELVAQR--GRFAELARAQ 580          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHIME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium meliloti GN=ndvA PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.799e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A I++LDEATSALD E+E  V++A+D     +TT ++AHRLST+R A ++  +D G+V E+G    L ++N  G +A +++
Sbjct:  485 AILKNAPILVLDEATSALDVETEARVKDAIDALRKDRTTFIIAHRLSTVREADLVIFMDQGRVVEMGGFHELSQSN--GRFAALLR 568          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHIEC (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndvA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.799e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLST+R A ++  +DDG+V E G    L  +N  G +A +++
Sbjct:  485 AILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQGGFDELSHSN--GRFAALLR 568          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BLOPB (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia pennsylvanicus (strain BPEN) GN=msbA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++ DEATSALD+ SE  + ++LD     +T++++AHRLST+ NA  I VI++G + E G H  L++    G YA++ +LQ
Sbjct:  496 ALLRDCPILIFDEATSALDSASEHIIHKSLDTLKKNRTSLIIAHRLSTVENADEILVIENGYIMERGVHKVLIRR--QGIYAQLYKLQ 581          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: BMRA_BACSU (Multidrug resistance ABC transporter ATP-binding/permease protein bmrA OS=Bacillus subtilis GN=bmrA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 34/76 (44.74%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +R   I++LDEATS+LD++SE+SVQ+AL+    G+TTIV+AHRLST+ +A  +  ++ G++   G+H  L+ ++
Sbjct:  492 ALLRNPSILMLDEATSSLDSQSEKSVQQALEVLMEGRTTIVIAHRLSTVVDADQLLFVEKGEITGRGTHHELMASH 567          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_AGRVI (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium vitis GN=ndvA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.069e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ A I++LDEATSALD E+E  V+ A+DR    +TT ++AHRLST+R A  +  +D G++ E+G +  L
Sbjct:  485 AILKDAPILVLDEATSALDVETEERVKSAIDRLRQNRTTFIIAHRLSTVREADQVLFLDHGRIVEMGGYDEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: EXP8_STRPN (Putative ABC transporter ATP-binding protein exp8 OS=Streptococcus pneumoniae GN=exp8 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-13
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   20 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            +I++LDEAT+ +D+E+E  VQ +L +   G+TTI +AHRLSTI++A+ I V+D G++ E G+H  LL     G Y +M  LQ
Sbjct:  496 KILILDEATANIDSETESLVQASLAKMRQGRTTIAIAHRLSTIQDANCIYVLDKGRIIESGTHEELLALG--GTYHKMYSLQ 575          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YKNV_BACSU (Uncharacterized ABC transporter ATP-binding protein yknV OS=Bacillus subtilis GN=yknV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274
            A +    I++LDEAT+++D E+E  +Q+AL     G+T +++AHRLSTIR+A  I V+D G+  E G+H  LL     G YA +++ Q  T
Sbjct:  513 ALLADPAIIILDEATASIDTETEVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKG--GIYAGLVKAQYST 601          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHILO (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium loti GN=ndvA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A I++LDEATSALD E+E  V+EA+D     +TT ++AHRL+T+R+A ++  +D G+V E+G  + L   N  G +A +++
Sbjct:  485 AVLKDAPILVLDEATSALDVETEDRVKEAIDELRRDRTTFIIAHRLTTVRDADLVVFMDKGRVVEMGGFAELSLRN--GRFASLLR 568          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
NDVA_RHOPA1.378e-1346.59Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHOPS1.799e-1347.73Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHIME1.799e-1341.86Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHIEC1.799e-1343.02Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_BLOPB2.350e-1342.05Lipid A export ATP-binding/permease protein msbA O... [more]
BMRA_BACSU2.350e-1344.74Multidrug resistance ABC transporter ATP-binding/p... [more]
NDVA_AGRVI3.069e-1345.83Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
EXP8_STRPN4.009e-1346.34Putative ABC transporter ATP-binding protein exp8 ... [more]
YKNV_BACSU5.236e-1341.76Uncharacterized ABC transporter ATP-binding protei... [more]
NDVA_RHILO5.236e-1341.86Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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