FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BARHE (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella henselae GN=ndvA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.930e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A I++LDEATSALD E+E  V++ALD     +TT ++AHRLST+RNA ++  ++ G + E GS   L+
Sbjct:  485 AVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRNADLVLFLEQGHLIEKGSFQELI 557          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y214_RICFE (Putative export ATP-binding/permease protein RF_0214 OS=Rickettsia felis GN=RF_0214 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.166e-12
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +RK +I+LLDEA SALD  SE+ + E++     GK  I +AHR+S+I +A  I VID G VA  GSH+ L KN+
Sbjct:  488 ALLRKPQILLLDEAMSALDTMSEQKLLESIKEIMKGKIIISIAHRISSIESADYILVIDKGGVAASGSHNDLSKNS 563          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPB (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB18) GN=ndvA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIR+A  I V + G+V E G+   LL     G +A + + Q
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFEAGRVIESGTFDELLAR--QGHFAALARAQ 580          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain HaA2) GN=ndvA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.989e-12
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I++LDEATSALDA +E  V  ALD    G+TT V+AHRLSTIR+A  I V ++G+V E G+   L+     G +A + + Q
Sbjct:  495 ALLKDPPILILDEATSALDAVTEAKVNLALDEVMRGRTTFVIAHRLSTIRHATRILVFENGRVIESGTFDDLVAQR--GHFAELARAQ 580          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1384_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1384 OS=Mycobacterium bovis GN=Mb1384 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A ++L+DEATSALDAE+E +V +AL      +T ++VAHRL++IR+A  +  +DDG+V E GS S LL
Sbjct:  483 ALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELL 555          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1349_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1349/MT1392 OS=Mycobacterium tuberculosis GN=Rv1349 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A ++L+DEATSALDAE+E +V +AL      +T ++VAHRL++IR+A  +  +DDG+V E GS S LL
Sbjct:  483 ALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVEDGSISELL 555          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BRUSU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella suis GN=ndvA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ + I++LDEATSALD E+E  V++A+D     +TT ++AHRLST+R+A ++  +D G + E GS + L
Sbjct:  485 AILKDSPILVLDEATSALDVETEEKVKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGSFNEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BLOFL (Lipid A export ATP-binding/permease protein msbA OS=Blochmannia floridanus GN=msbA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATS+LD ESE  + ++++     +T++++AHRLSTI NA  I V++ G + E G H  LL  N  G Y+++ + Q
Sbjct:  496 ALLRNCPILILDEATSSLDTESECIIYKSINILKKNRTSLIIAHRLSTIENADEILVVERGSIVERGIHVDLL--NHKGVYSQLYKFQ 581          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y691_RICTY (Putative export ATP-binding/permease protein RT0691 OS=Rickettsia typhi GN=RT0691 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +RK +I+LLDEA SALD  SE+ +  A+ +   G   I +AHR+S+I +A  I VID GKV   GSH  L KN+
Sbjct:  488 ALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKGKVVTAGSHYDLSKNS 563          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_RHIRD (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium radiobacter GN=ndvA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLST+R+A ++  +D G++ E G+   L
Sbjct:  485 AILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIEKGTFDEL 556          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
NDVA_BARHE8.930e-1346.58Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
Y214_RICFE1.166e-1250.00Putative export ATP-binding/permease protein RF_02... [more]
NDVA_RHOPB1.523e-1246.59Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_RHOP21.989e-1245.45Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
Y1384_MYCBO3.394e-1249.32Uncharacterized ABC transporter ATP-binding protei... [more]
Y1349_MYCTU3.394e-1249.32Uncharacterized ABC transporter ATP-binding protei... [more]
NDVA_BRUSU3.394e-1244.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_BLOFL3.394e-1240.91Lipid A export ATP-binding/permease protein msbA O... [more]
Y691_RICTY4.432e-1248.68Putative export ATP-binding/permease protein RT069... [more]
NDVA_RHIRD4.432e-1244.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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