FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_AGRT5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ndvA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ A I++LDEATSALD E+E  V+ A+D     +TT ++AHRLST+R+A ++  +D G++ E G+   L
Sbjct:  485 AILKNAPILVLDEATSALDVETEARVKAAVDALRKNRTTFIIAHRLSTVRDADLVLFLDQGRIIEKGTFDEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BRUAB (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella abortus GN=ndvA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ + I++LDEATSALD E+E  V +A+D     +TT ++AHRLST+R+A ++  +D G + E GS + L
Sbjct:  485 AILKDSPILVLDEATSALDVETEEKVTQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGSFNEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BRUA2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella abortus (strain 2308) GN=ndvA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ + I++LDEATSALD E+E  V +A+D     +TT ++AHRLST+R+A ++  +D G + E GS + L
Sbjct:  485 AILKDSPILVLDEATSALDVETEEKVTQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGSFNEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BARQU (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella quintana GN=ndvA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 220
            A ++ A I++LDEATSALD E+E  V++ALD     +TT ++AHRLST+R+A ++  +++G + E G+   L+
Sbjct:  485 AVLKNAPILILDEATSALDVETEARVKDALDCISHNRTTFIIAHRLSTVRHADLVLFLENGHLIEKGNFQELI 557          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA2_COLP3 (Lipid A export ATP-binding/permease protein msbA 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A +R A I++LDEATSALD  SE+ +Q+AL R    KT +++AH+LS+I++   I VI+ G++ E G+H  L
Sbjct:  499 AMLRDASIIVLDEATSALDNHSEKHIQQALTRLTQHKTVLIIAHKLSSIQHVDEIIVINKGRLIEQGNHKTL 570          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDLB_BUCAP (Multidrug resistance-like ATP-binding protein mdlB OS=Buchnera aphidicola subsp. Schizaphis graminum GN=mdlB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    8 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            VR  +I++LDEAT+ +D+ +E+ +Q  L    +  T +V+AHRLST+  A +I V+  GK+ ELG+H  LL+    G Y +M   Q F
Sbjct:  493 VRNPKILILDEATANIDSGTEKLIQTTLSSIRAKTTLVVIAHRLSTVIEADMIVVLKKGKIVELGTHKQLLEKK--GFYWKMYNFQLF 578          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YFIC_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiC OS=Bacillus subtilis GN=yfiC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 33/81 (40.74%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            +++LDEATS +D  +E ++QEAL R   G+T++++AHRL+TI+ A  I V+ +G++ E GSH  L++    G Y+ + + Q
Sbjct:  523 LLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHRLNTIQRADQIVVLKNGEMIEKGSHDELIRQK--GFYSDLYESQ 601          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y492_RICBR (Putative export ATP-binding/permease protein RBE_0492 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0492 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +RK +I+LLDEA +ALD++SE+ +  ++     GK  I +AHR+S+I +A  I +ID G V   G+H+HLLK +
Sbjct:  487 ALLRKPQILLLDEAMNALDSQSEQKLLSSIRDIMKGKIVISIAHRISSIESADNILIIDKGAVEAEGTHAHLLKTS 562          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: NDVA_BRUME (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Brucella melitensis GN=ndvA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.560e-12
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 217
            A ++ + I++LDEATSALD E+E  +++A+D     +TT ++AHRLST+R+A ++  +D G + E GS + L
Sbjct:  485 AILKDSPILVLDEATSALDVETEEKLKQAVDELSHNRTTFIIAHRLSTVRSADLVLFMDKGHLVESGSFNEL 556          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YKNU_BACSU (Uncharacterized ABC transporter ATP-binding protein yknU OS=Bacillus subtilis GN=yknU PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   23 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            I++LD+ATSA+D ++E S+Q AL      +TT +VAHR+S++++A  I V + G++ E G+H  LL+    G Y ++  LQ
Sbjct:  493 ILILDDATSAVDMQTEHSIQLALKEVMKNRTTFIVAHRISSLKHADEILVFNKGRIRERGTHHELLEKG--GYYKKIYDLQ 571          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
NDVA_AGRT54.432e-1244.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BRUAB5.789e-1244.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BRUA25.789e-1244.44Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARQU5.789e-1243.84Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA2_COLP35.789e-1247.22Lipid A export ATP-binding/permease protein msbA 2... [more]
MDLB_BUCAP5.789e-1240.91Multidrug resistance-like ATP-binding protein mdlB... [more]
YFIC_BACSU7.560e-1240.74Uncharacterized ABC transporter ATP-binding protei... [more]
Y492_RICBR7.560e-1244.74Putative export ATP-binding/permease protein RBE_0... [more]
NDVA_BRUME7.560e-1243.06Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
YKNU_BACSU1.684e-1140.74Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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