FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YHEI_BACSU (Probable multidrug resistance ABC transporter ATP-binding/permease protein yheI OS=Bacillus subtilis GN=yheI PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A +   EI++LD++ SA+DA++E ++ + +     GKTT ++ HRLS + +A +I V+D G +AE G+H  LL NN  G Y    + Q+
Sbjct:  488 ALMANPEILILDDSLSAVDAKTEAAIIKNIRENRKGKTTFILTHRLSAVEHADLILVMDGGVIAERGTHQELLANN--GWYREQYERQQ 574          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1303_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1303c OS=Mycobacterium bovis GN=Mb1303c PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            AF+ + ++++LDEATS++D  +E  +Q A+      +T+ ++AHRLSTIR+A  I V+  G++ E G+H+ LL     G Y +M
Sbjct:  547 AFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARR--GVYYQM 628          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1272_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1272c/MT1310 OS=Mycobacterium tuberculosis GN=Rv1272c PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            AF+ + ++++LDEATS++D  +E  +Q A+      +T+ ++AHRLSTIR+A  I V+  G++ E G+H+ LL     G Y +M
Sbjct:  547 AFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARR--GVYYQM 628          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB7_HUMAN (ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++L DEATS+LD+ +E ++  A+      +T+I +AHRLST+ +A  I V+D GKVAE G+H H L  NP   Y+ M   Q
Sbjct:  622 AILKDPPVILYDEATSSLDSITEETILGAMKDVVKHRTSIFIAHRLSTVVDADEIIVLDQGKVAERGTH-HGLLANPHSIYSEMWHTQ 708          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: YCFI_YEAST (Metal resistance protein YCF1 OS=Saccharomyces cerevisiae GN=YCF1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 247
            A +  ++I++LDEAT+A+D E+++ VQE +  A   +T + +AHRL+TI ++  I V+D+GKVAE  S   LL +N    Y+
Sbjct: 1423 AMLVPSKILVLDEATAAVDVETDKVVQETIRTAFKDRTILTIAHRLNTIMDSDRIIVLDNGKVAEFDSPGQLLSDNKSLFYS 1504          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y663_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0663 OS=Haemophilus influenzae GN=HI0663 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A +  AE+ + DEATS +D ESE  + + + +    KT ++++HRL+   NA  I V+D GK+ E G+H  L++    G YA M Q Q+
Sbjct:  463 ALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQGTHKELMEK--QGAYAEMFQQQK 549          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1383_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A +    +++LDEAT+  D ESE  VQ+AL+R    +T +V+AHRL TI  A  I V+D G++ E G+H  LL     G Y R+
Sbjct:  759 AILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVERGTHEELLA--AGGRYCRL 840          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1348_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1348/MT1390 OS=Mycobacterium tuberculosis GN=Rv1348 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A +    +++LDEAT+  D ESE  VQ+AL+R    +T +V+AHRL TI  A  I V+D G++ E G+H  LL     G Y R+
Sbjct:  759 AILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVERGTHEELLA--AGGRYCRL 840          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MRP2_RAT (Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 226
            A +RK++I++LDEAT+A+D E++  +Q  + +  S  T I +AHRL TI ++  I V+D+GK+ E GS   LL N
Sbjct: 1446 AVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSN 1520          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y696_RICPR (Putative export ATP-binding/permease protein RP696 OS=Rickettsia prowazekii GN=RP696 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +RK +I+LLDEA SALD  SE+ +  A+ +   G   I +AHR+S+I +A  I VID G V   GSH  L KN+
Sbjct:  488 ALLRKPKILLLDEAMSALDTMSEQKLLNAIKKIMKGNIIISIAHRISSIESADYILVIDKGGVVTEGSHYDLSKNS 563          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
YHEI_BACSU2.200e-1138.20Probable multidrug resistance ABC transporter ATP-... [more]
Y1303_MYCBO2.200e-1139.29Uncharacterized ABC transporter ATP-binding protei... [more]
Y1272_MYCTU2.200e-1139.29Uncharacterized ABC transporter ATP-binding protei... [more]
ABCB7_HUMAN2.200e-1142.05ATP-binding cassette sub-family B member 7, mitoch... [more]
YCFI_YEAST2.873e-1141.46Metal resistance protein YCF1 OS=Saccharomyces cer... [more]
Y663_HAEIN2.873e-1138.20Uncharacterized ABC transporter ATP-binding protei... [more]
Y1383_MYCBO2.873e-1142.86Uncharacterized ABC transporter ATP-binding protei... [more]
Y1348_MYCTU2.873e-1142.86Uncharacterized ABC transporter ATP-binding protei... [more]
MRP2_RAT3.752e-1144.00Canalicular multispecific organic anion transporte... [more]
Y696_RICPR4.900e-1147.37Putative export ATP-binding/permease protein RP696... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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