FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MRP2_MOUSE (Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN-NPDGCYARMIQLQRFTHSQV 286
            A +RK++I++LDEAT+A+D E++  +Q  +    S  T I +AHRL TI ++  I V+D GK+ E GS   LL N  P    A+   ++   H+++
Sbjct: 1448 AVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFSQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGPFYLMAKEAGIESVNHTEL 1543          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y1073_RICCN (Putative export ATP-binding/permease protein RC1073 OS=Rickettsia conorii GN=RC1073 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 229
            A +R  +I+LLDEA SALD  SE+ + E++ +   G   I +AHR+S+I +A  I VID G V   GSH+ L KN+
Sbjct:  488 ALLRMPQILLLDEAMSALDTMSEQKLLESIKKIMRGNIIISIAHRISSIESADYILVIDKGGVVAEGSHNDLSKNS 563          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2
Query:    5 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            F++   I+L DEATSALD+ +E  +  AL    S +T+I +AHRL+T      I V+++GKV E G H  LL     G YA++
Sbjct:  630 FLKSPAILLCDEATSALDSTTEAEILNALKALASNRTSIFIAHRLTTAMQCDEIVVLENGKVVEQGPHDELL--GKSGRYAQL 710          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MRP2_MOUSE4.900e-1137.50Canalicular multispecific organic anion transporte... [more]
Y1073_RICCN6.400e-1146.05Putative export ATP-binding/permease protein RC107... [more]
AB25B_ARATH8.359e-1142.17ABC transporter B family member 25, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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