FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_RAT (ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20 Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +++ +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ +G+V E G+H LL+ G YA +I+ Q Sbjct: 607 ALIKRPTVLILDEATSALDAESERIVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLQKG--GLYAELIRRQ 692
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_MOUSE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20 Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +++ +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ +G+V E G+H LLK G Y+ +I+ Q Sbjct: 607 ALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLKKG--GLYSELIRRQ 692
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20 Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259 A VR+ I+LLDEATSALD ESE+ VQEALD+A G+T IV+AHRLSTI+NA +I VI++GKV E G+H LL G Y M+Q Sbjct: 1187 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQK--GIYFSMVQ 1270 HSP 2 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR +I+LLDEATSALD ESE VQ ALD+A G+TTIV+AHRLST+RNA VIA D G + E G+H L++ G Y +++ Q Sbjct: 543 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK--GIYFKLVMTQ 628
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_CAEEL (Multidrug resistance protein 1 OS=Caenorhabditis elegans GN=pgp-1 PE=2 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20 Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT---HSQVIGMTSGSSSSARPKDDEE 340 A VR +I+LLDEATSALDAESE VQ+ALD+A G+TTI++AHRLSTIRNA +I +G+V E+G H L+ G Y ++ Q FT S G S +S AR + E Sbjct: 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ--QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHE 681 HSP 2 Score: 93.2041 bits (230), Expect = 6.385e-19 Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR +I+LLDEATSALD ESE+ VQEALDRA G+T IV+AHRL+T+ NA IAV+ +G + E G+H+ L+ G Y ++ Q Q Sbjct: 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK--GAYYKLTQKQ 1316
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20 Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ +I+LLDEATSALDAESER VQ+AL + +TT+VVAHRL+TIR A +IAV+ GKV E G+H ++K +P+G Y+++++LQ Sbjct: 509 AILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIK-DPEGTYSQLVRLQ 595 HSP 2 Score: 85.1149 bits (209), Expect = 1.739e-16 Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256 A ++ +I+LLDEATSALDAESER VQ+ALD+ +TT+VVAH L+TI++A +IAV+ +G +AE G H L++ + G YA ++ Sbjct: 1158 AILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVAHLLTTIKDADMIAVVKNGVIAESGRHETLMEIS-GGAYASLV 1241
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20 Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ--------RFTHSQVIGMTSGSSSSAR 322 A +R +I+LLDEATSALDAESE+ VQ+ALD +TTIVVAHRLSTIRN I V+ DG+V E GSHS L+ D YA ++ Q R S+ +GSSSS R Sbjct: 523 AVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD--YATLVNCQETEPQENSRSIMSETCKSQAGSSSSRR 635 HSP 2 Score: 90.5077 bits (223), Expect = 4.139e-18 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ ++LLDEATSALD SE+ VQEALD+ G+TT++VAHRLSTIR A +AV+ G+V E GSH L+ + P+G Y ++ LQ Sbjct: 1156 AVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELV-SIPNGFYKQLTSLQ 1242
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR3_MOUSE (Multidrug resistance protein 3 OS=Mus musculus GN=Abcb1a PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR+ I+LLDEATSALD ESE+ VQEALD+A G+T IV+AHRLSTI+NA +I VI +GKV E G+H LL G Y M+ +Q Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSVQ 1270 HSP 2 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR +I+LLDEATSALD ESE VQ ALD+A G+TTIV+AHRLST+RNA VIA D G + E G+H L++ G Y +++ Q Sbjct: 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK--GIYFKLVMTQ 625
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_CRIGR (Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR+ I+LLDEATSALD ESE+ VQEALD+A G+T IV+AHRLSTI+NA +I VI +GKV E G+H LL G Y M+ +Q Sbjct: 1186 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSVQ 1271 HSP 2 Score: 95.5153 bits (236), Expect = 1.287e-19 Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSS 316 A VR +I+LLDEATSALD ESE VQ ALD+A G+TTIV+AHRLST+RNA +IA D G + E G+H L++ G Y +++ Q + +G G S + Sbjct: 541 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMREK--GIYFKLVMTQTAGNEIELGNEVGESKN 643
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_DANRE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20 Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268 A V+ I++LDEATSALDAESER VQEALDRA +G+T +++AHRLSTI+ A +I V+ +G++ E G+H LL G YA +I+ QR Sbjct: 623 ALVKNPSILILDEATSALDAESERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAGTHLELLSKG--GLYAELIKRQR 709
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19 Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESER++Q ALD KT +V+AHRLSTI A I VIDDG V E GSHS L++ DG YA++ ++Q Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIEK--DGAYAQLHRIQ 579 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |