FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: PMD1_SCHPO (Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274
            A +   +I+LLDEATSALD++SE  VQ+ALD A   +TTIV+AHRLSTIRNA  I V++ GK+ E GSH+ LL  N  G YAR+++ Q+ +
Sbjct:  581 AVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLN--GAYARLVEAQKLS 669          

HSP 2 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223
            A +R  +I+LLDEATSALD+ SE+ VQEAL+ A  G+TT+ +AHRLS+I++A  I V D G +AE G+H+ L+K
Sbjct: 1272 ALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVK 1345          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESER++Q ALD     KT +V+AHRLSTI  A  I VIDDG V E GSHS L++   DG YA++ ++Q
Sbjct:  494 ALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIEK--DGAYAQLHRIQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  D G + E G+H  L+K    G Y +++  Q
Sbjct:  543 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEK--GIYFKLVMTQ 628          

HSP 2 Score: 94.3597 bits (233), Expect = 2.866e-19
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T +V+AHRLSTI+NA +I VI +G+V E G+H  LL     G Y  M+Q
Sbjct: 1188 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQK--GIYFSMVQ 1271          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTH 277
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI NA  I V+D G+VAE G+H  LL  N  G YA + ++Q  TH
Sbjct:  501 AIYKDAPILILDEATSALDSESERQVQAALEALMVGRTTLVIAHRLSTIENADRIVVLDHGRVAEHGTHEELLAAN--GLYAGLHRIQFATH 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPL (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Lens) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            A ++ A I++LDEATSALD+ESE  +Q AL++  +G+TT+++AHRLSTI++AH I V+  G++ E GSH  LL  + DG YA++ ++Q+F
Sbjct:  492 AILKDAPILILDEATSALDSESEHYIQAALEQVMNGRTTLIIAHRLSTIKHAHKIIVMQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            A ++ A I++LDEATSALD+ESE  +Q AL++   G+TT+++AHRLSTI++AH I V+  G++ E GSH  LL  + DG YA++ ++Q+F
Sbjct:  492 AILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271
            A ++ A I++LDEATSALD+ESE  +Q AL++   G+TT+++AHRLSTI++AH I V+  G++ E GSH  LL  + DG YA++ ++Q+F
Sbjct:  492 AILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R  +I+LLDEATSALDAESE+ VQ+ALD     +TTIV+AHRLSTIRN   I V+ DG+V E GSHS L+    D  YA ++  Q
Sbjct:  524 AVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGD--YATLVNCQ 609          

HSP 2 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++LLDEATSALD  +E+ VQEALD+   G+TTI+VAHRLSTIR A  I V+  GKV E GSH  L+  + DG Y ++  LQ
Sbjct: 1158 AVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKS-DGFYKKLTSLQ 1244          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD+   G+TT+V+AHRLSTI  A +I V+D G++ E GSH+ LL  N  G Y+R+
Sbjct:  506 ALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAQLLAQN--GYYSRL 587          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A +++LDEATSALD ESER +Q+AL+R C G+TT V+AHRLSTI  A  I V++ G++ E G+H  LL    DG YA + QLQ
Sbjct:  489 AIFKDAPLLVLDEATSALDTESERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIESGTHGELLAQ--DGAYAALHQLQ 574          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
PMD1_SCHPO1.680e-1954.95Leptomycin B resistance protein pmd1 OS=Schizosacc... [more]
MSBA_VIBVY1.680e-1955.68Lipid A export ATP-binding/permease protein msbA O... [more]
MDR1_RAT1.680e-1956.82Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
MSBA_RALEJ3.743e-1955.43Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPL3.743e-1950.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPH3.743e-1950.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_LEGPA3.743e-1950.00Lipid A export ATP-binding/permease protein msbA O... [more]
AB14B_ARATH3.743e-1956.82ABC transporter B family member 14 OS=Arabidopsis ... [more]
MSBA_PSEF58.339e-1953.57Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_CHRSD8.339e-1953.41Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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